Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0248
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...   130   6e-31
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...   127   8e-30
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ...    29   2.2  
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc...    29   3.8  
At1g10530.1 68414.m01186 expressed protein                             28   6.7  
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    27   8.8  

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score =  130 bits (315), Expect = 6e-31
 Identities = 66/112 (58%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
 Frame = +1

Query: 334 PVTKALKAQRKVVKGEHGKR-VRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 510
           P  KALKA + V  G+  K+  +KIR  V F RPKT   PR PKYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQ 73

Query: 511 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTL
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTL 125


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score =  127 bits (306), Expect = 8e-30
 Identities = 65/112 (58%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
 Frame = +1

Query: 334 PVTKALKAQRKVVKGE-HGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 510
           P  KALKA + V  G+   K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y 
Sbjct: 14  PKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQ 73

Query: 511 IIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           I+K+PLT+E+AMKKIEDNNTLVFIV   A+K  IK AVKK+YDI   KVNTL
Sbjct: 74  ILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTL 125


>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
           dependent protease VAR2 GI:7650138 from [Arabidopsis
           thaliana]
          Length = 695

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 569 PWSLLFTQVQTSTISRLQSRNSM 637
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 588 PWSLMDSSAQSDVIMRMMARNSM 610


>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
           dependent protease GI:7650138 from [Arabidopsis
           thaliana]
          Length = 685

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 569 PWSLLFTQVQTSTISRLQSRNSM 637
           PWSL+ +  Q+  I R+ +RNSM
Sbjct: 581 PWSLMDSSEQSDVIMRMMARNSM 603


>At1g10530.1 68414.m01186 expressed protein
          Length = 166

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 355 AQRKVVKGEHGKRVRKIRNSVHFRRPKTFEP 447
           + +KV + + GK+ R IRNS    + KT+ P
Sbjct: 126 SDKKVPEKKQGKQFRVIRNSTSLLKSKTWRP 156


>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 207  TFS*EGCGNSSQNCQTQASSFQIEDC---TEAQKDWD*GTKKSSETCY 341
            TF+   CGN  Q  + + +S+    C   ++A+K ++ G++    TC+
Sbjct: 891  TFNFTNCGNLEQAAKEEITSYAQRKCQLLSDARKHYNEGSEALFSTCF 938


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,135
Number of Sequences: 28952
Number of extensions: 204149
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)