Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0247
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   3.6  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   4.8  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   4.8  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   6.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   8.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.4  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 8   PKPTSPARGAPCRLANEALAETH 76
           P P + + G+P  +A+ A A  H
Sbjct: 34  PPPATTSSGSPASVASNASAPLH 56


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 377 LFLLHNFRIYL 409
           +F LH FRIY+
Sbjct: 653 IFALHKFRIYI 663


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 380 FLLHNFRIYLVFNVYSY*YYILTFNLFSQHYI 475
           FLL     Y++   +   +Y + F +F   Y+
Sbjct: 279 FLLDEKLSYIILTSFLNNFYFIIFQVFESFYL 310


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 76  LEPSYRSPTYILANPAN 126
           LE +++  T+IL NP N
Sbjct: 45  LESNHKLVTFILKNPPN 61


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +2

Query: 74   HWNRRTGH 97
            HW+++TGH
Sbjct: 2518 HWDKQTGH 2525


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 393 TFAYI*YSMFIHINTIF*HLTCS 461
           T +YI +++F    TI   +TCS
Sbjct: 257 TISYILFALFNTFGTILLIMTCS 279


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 255 MWDYIQETDYMY 290
           +WD  Q+T YMY
Sbjct: 318 VWDDEQKTPYMY 329


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 86  RTGHRPTS*RIQPIHKSSSF 145
           R  H P   +++P+  +SSF
Sbjct: 66  RADHSPVFGKVEPVPHTSSF 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,002
Number of Sequences: 336
Number of extensions: 1988
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)