Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0247
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   4.9  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   4.9  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   8.6  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 378 NY*DQLDFNQIYST*IIIT 322
           N  DQ DF Q+YST + IT
Sbjct: 201 NVDDQRDFEQVYSTDVAIT 219


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 5   EPKPTSPARGAPCRLANEALAE 70
           EP P S A  +P + + EALAE
Sbjct: 64  EPSPASSASASPVKKSAEALAE 85


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 2    IEPKPTSPARGAPCRLANEALAETHWNRRTG 94
            I+PKP  PARG+   LA + L +T   RR G
Sbjct: 929  IKPKPLEPARGSD--LARDFLIKT--RRRKG 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,072
Number of Sequences: 5004
Number of extensions: 33279
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)