Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0247
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0363 + 4754650-4755912                                           31   0.53 
02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356     28   3.7  
06_03_0774 + 24504964-24507459                                         27   6.5  
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074...    27   8.7  

>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 17  TSPARGAPCRLANEALAETHWNRRTGHR 100
           T+ A GAP   A E   E  W RRTG+R
Sbjct: 95  TAAADGAPAATATEGDGERGWRRRTGNR 122


>02_05_1260 + 35299795-35299905,35300065-35300112,35301181-35302356
          Length = 444

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 387 SKNNY*DQLDFNQIYST*IIITLVFNPNENINGTCNPFPE 268
           SKN    +L   QIY    I  L+ +P+   +GTC+PFP+
Sbjct: 211 SKNAETGELQSYQIYPESPIGRLI-SPSSACSGTCSPFPD 249


>06_03_0774 + 24504964-24507459
          Length = 831

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 19  LSCTRCTLPISERGSGGD 72
           + C RC  P++ RG GGD
Sbjct: 712 ICCRRCQDPVTSRGEGGD 729


>02_03_0303 -
           17506392-17506399,17507055-17507286,17507390-17507461,
           17507561-17508586,17509194-17509448,17510483-17510962
          Length = 690

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 98  GDRYDGSSASPPEPRSLIGRVHRVQERLA 12
           G R + SSA PP PRS + R   ++E  A
Sbjct: 98  GSRGESSSAPPPPPRSRVLRQGGLEEEYA 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,431
Number of Sequences: 37544
Number of extensions: 201207
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)