Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0247
         (506 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-752|AAN11580.1|  216|Drosophila melanogaster CG32259-PB...    29   4.8  

>AE014296-752|AAN11580.1|  216|Drosophila melanogaster CG32259-PB
           protein.
          Length = 216

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 1   D*AKANLSCTRCTLPISERGSGGDALEPSYRSPTYILANPANT 129
           D A+ N  C +C++  +E G  G+  EP+  S T  +A+ ANT
Sbjct: 154 DKAQFNWRCPKCSVEWAEGGPAGEEAEPAGCSRT--IADGANT 194


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,805,730
Number of Sequences: 53049
Number of extensions: 350211
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1825511424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)