Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0246
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    29   0.90 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    28   1.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    26   6.3  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 51  DYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           DY +L+ PI     +N +FFA E   +    ++ GAF SG+  A
Sbjct: 713 DYAILSEPI-----DNTVFFASEAISQKNSGSIRGAFDSGILAA 751


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 615 PFNSKYTNACRIVDLLRN 668
           P NS+Y   CRIVD+L N
Sbjct: 332 PGNSEYNQLCRIVDMLGN 349


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 635 RIFGIKRYIYSINYEYIIHSVFPMTSNNCSITNAAHRRLLSPQMTSHISV 486
           RI  +K+ I  I+Y Y + S+FP   ++    N   ++L    +  + SV
Sbjct: 31  RISALKKAIAGISYGYDMSSLFPSVISSMESNNLELKKLCYLYLKIYASV 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,682
Number of Sequences: 5004
Number of extensions: 60339
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)