Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0246
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0783 - 28040828-28041615,28041942-28043589 83 2e-16
08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882 77 1e-14
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 75 4e-14
02_05_0795 - 31792231-31794780 75 4e-14
01_06_0454 - 29506637-29508175 66 3e-11
09_03_0073 - 12092566-12092645,12092788-12092869,12092979-120932... 51 1e-06
09_03_0075 - 12112685-12112696,12112778-12112835,12112916-121129... 47 1e-05
03_02_0001 + 4844009-4844046,4845155-4845410,4845560-4845704,484... 47 2e-05
04_04_1203 - 31703512-31703832,31703922-31704351,31704454-317045... 45 5e-05
04_04_1545 - 34278266-34278586,34278685-34279114,34279225-342793... 37 0.014
04_04_1544 - 34273909-34274220,34274340-34274769,34274933-342750... 36 0.044
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 29 3.8
05_03_0266 + 11303932-11304072,11304150-11304185,11304640-113049... 28 8.7
>04_04_0783 - 28040828-28041615,28041942-28043589
Length = 811
Score = 83.4 bits (197), Expect = 2e-16
Identities = 40/63 (63%), Positives = 48/63 (76%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F+ GSYS VAVG+SG DYD+LA + G+ RLFFAGE T R YPAT+HGAF+SGLREA
Sbjct: 575 FSLGSYSHVAVGASGDDYDILAESV----GDGRLFFAGEATTRRYPATMHGAFISGLREA 630
Query: 183 GRL 191
+
Sbjct: 631 ANI 633
>08_01_0295 - 2379181-2379336,2379660-2380324,2381346-2382882
Length = 785
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/60 (63%), Positives = 45/60 (75%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAGRL 191
GSYS + VGSSGTDYD+LA + +RLFFAGE T R YPAT+HGA LSGLREA ++
Sbjct: 541 GSYSHIRVGSSGTDYDILAESV-----NDRLFFAGEATNRAYPATMHGALLSGLREASKI 595
>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F+RG+YS+VAVG+SG DYD+L P+ + LFFAGE T + +P TV GA LSGLREA
Sbjct: 1172 FSRGAYSYVAVGASGRDYDILGRPV-----SDCLFFAGEATCKEHPDTVGGAILSGLREA 1226
Query: 183 GRLADML 203
R+ D++
Sbjct: 1227 VRIIDLV 1233
>02_05_0795 - 31792231-31794780
Length = 849
Score = 75.4 bits (177), Expect = 4e-14
Identities = 37/63 (58%), Positives = 45/63 (71%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F GSYS+VA+GSSG DYD+LA + +R+FFAGE T R YPAT+HGA LSG REA
Sbjct: 655 FTYGSYSYVAIGSSGDDYDILAESVC-----DRVFFAGEATNRRYPATMHGALLSGYREA 709
Query: 183 GRL 191
+
Sbjct: 710 ANI 712
>01_06_0454 - 29506637-29508175
Length = 512
Score = 66.1 bits (154), Expect = 3e-11
Identities = 37/68 (54%), Positives = 44/68 (64%), Gaps = 8/68 (11%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIP-GTDG-------ENRLFFAGEHTMRNYPATVHGAFLS 167
GSYS+VAVGSSG D D +A P+P G D RL FAGE T R + +T H A+LS
Sbjct: 433 GSYSYVAVGSSGDDLDRMAEPLPRGPDAAADERPPSPRLLFAGEATHRTHYSTTHAAYLS 492
Query: 168 GLREAGRL 191
G+REA RL
Sbjct: 493 GVREANRL 500
>09_03_0073 -
12092566-12092645,12092788-12092869,12092979-12093236,
12093314-12093463,12093581-12093724,12093744-12094077,
12094639-12094785,12097446-12097695,12100511-12100616
Length = 516
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F RGS+S +G S +YD L AP+ R++F GEHT Y VHGA+L+G+ A
Sbjct: 442 FFRGSFSNWPIGVSRYEYDQLRAPV------GRVYFTGEHTSERYNGYVHGAYLAGIDSA 495
>09_03_0075 -
12112685-12112696,12112778-12112835,12112916-12112973,
12113138-12113219,12113373-12113630,12113708-12113857,
12113975-12114118,12114265-12114528
Length = 341
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F +GS+S +G S ++D L AP+ R++F GEHT Y VHGA+L+G+ A
Sbjct: 251 FFQGSFSNWPIGVSRYEHDQLRAPV------GRVYFTGEHTSERYNGYVHGAYLAGIDSA 304
>03_02_0001 +
4844009-4844046,4845155-4845410,4845560-4845704,
4845747-4845931,4847011-4847268,4847395-4847476,
4847562-4847641
Length = 347
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F +G++S +G + +YD L API R++F GEHT Y VHG +L+G+ A
Sbjct: 273 FYKGTFSNWPIGVNRYEYDQLRAPI------ERVYFTGEHTSEYYNGYVHGGYLAGIDSA 326
Query: 183 GRLAD 197
L D
Sbjct: 327 EILID 331
>04_04_1203 -
31703512-31703832,31703922-31704351,31704454-31704551,
31704661-31704763,31704849-31704934,31705022-31705109,
31705194-31705358,31705412-31705500,31705622-31705734,
31707646-31707658
Length = 501
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/57 (45%), Positives = 31/57 (54%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
GSY+F VG Y+ L P+ + LFFAGE T Y TVHGAF +GL A
Sbjct: 411 GSYTFDGVGKPRDLYEKLRIPV------DNLFFAGEATSVQYTGTVHGAFSTGLMAA 461
>04_04_1545 -
34278266-34278586,34278685-34279114,34279225-34279322,
34279415-34279517,34279609-34279694,34279778-34279865,
34279950-34280063,34280147-34280235,34280369-34280484,
34280906-34280951
Length = 496
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/54 (38%), Positives = 28/54 (51%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGL 173
GSYS VG Y+ AP+ LFFAGE ++ +VHGA+ SG+
Sbjct: 406 GSYSCDLVGKPADLYERFCAPV------GNLFFAGEAACIDHSGSVHGAYSSGI 453
>04_04_1544 -
34273909-34274220,34274340-34274769,34274933-34275030,
34275178-34275280,34275386-34275471,34275590-34275677,
34275773-34275886,34275975-34276179,34276530-34276557
Length = 487
Score = 35.5 bits (78), Expect = 0.044
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAGRL 191
GSYS VG AAP+ EN L+FAGE ++ +VHGA+ SG+ A
Sbjct: 400 GSYSCDLVGKPADVSARFAAPV-----EN-LYFAGEAASADHSGSVHGAYSSGIAAADEC 453
Query: 192 ADMLL 206
+L
Sbjct: 454 RKRIL 458
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 164 IGFKGSWEIGRHVASSATNH 223
IG K S GRH+A S+TNH
Sbjct: 168 IGKKNSGGFGRHIADSSTNH 187
>05_03_0266 +
11303932-11304072,11304150-11304185,11304640-11304903,
11305157-11305524,11305603-11305773,11305853-11306141,
11306373-11306393
Length = 429
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 714 WKYFILIISTNKKYPNYVVDQRCDMHSYIW 625
+ ++IL++ T KK + ++ R D H+Y W
Sbjct: 327 YSHWILLVITPKKSTCHYLNSRIDKHAYDW 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,270
Number of Sequences: 37544
Number of extensions: 366761
Number of successful extensions: 921
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -