Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0246
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56095| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)                65   5e-11
SB_53565| Best HMM Match : Amino_oxidase (HMM E-Value=9.7e-19)         38   0.006
SB_36698| Best HMM Match : Heme_oxygenase (HMM E-Value=2.5)            37   0.015
SB_14112| Best HMM Match : Amino_oxidase (HMM E-Value=3.3e-13)         37   0.015
SB_19364| Best HMM Match : zf-C5HC2 (HMM E-Value=5)                    37   0.019
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           33   0.24 
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     33   0.31 
SB_38989| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         31   1.3  
SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)                   29   2.9  
SB_15624| Best HMM Match : Phage_G (HMM E-Value=9.5)                   29   2.9  
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)                 28   6.7  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_56095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  101 bits (242), Expect = 6e-22
 Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 12/83 (14%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPI---------PGTD---GENRLFFAGEHTMRNYPAT 146
           ++RGSYS+VA GSSG DYDL+A+P+         PGT       R+FFAGEHT+RNYPAT
Sbjct: 57  WSRGSYSYVAAGSSGNDYDLMASPVAPLPTANVAPGTPQPLNPPRVFFAGEHTIRNYPAT 116

Query: 147 VHGAFLSGLREAGRLADMLLPLP 215
           VHGA LSGLREAGR+AD  L LP
Sbjct: 117 VHGALLSGLREAGRIADQFLGLP 139


>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 6/70 (8%)
 Frame = +3

Query: 6   ARGSYSFVAVGSSGTDYDLLAAPIPGTDGEN------RLFFAGEHTMRNYPATVHGAFLS 167
           +RGSY+++   S G D D+LA+P+P  +GE       ++ FAGE T R+  AT HGA++S
Sbjct: 400 SRGSYTYIPRYSGGADIDILASPLPHLEGEAQGNVPCKILFAGEATNRSAYATTHGAYIS 459

Query: 168 GLREAGRLAD 197
           G+REA R+ D
Sbjct: 460 GVREAKRILD 469


>SB_53565| Best HMM Match : Amino_oxidase (HMM E-Value=9.7e-19)
          Length = 438

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 26/63 (41%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           + RG YS  +  + G   DL A P+ G     RLFFAGE T    PATV  A  +G R A
Sbjct: 361 YVRGGYSASSAHAYGMRSDL-AKPVSG-----RLFFAGEATHVTNPATVQAAIETGRRAA 414

Query: 183 GRL 191
             +
Sbjct: 415 SEV 417


>SB_36698| Best HMM Match : Heme_oxygenase (HMM E-Value=2.5)
          Length = 240

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 26/63 (41%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           + RG YS  +  + G   +L A PI G     RLFFAGE T    PATV  A  +G R A
Sbjct: 167 YVRGGYSASSAHAYGMRREL-AKPISG-----RLFFAGEATHVTNPATVQAAIETGRRAA 220

Query: 183 GRL 191
             +
Sbjct: 221 SEV 223


>SB_14112| Best HMM Match : Amino_oxidase (HMM E-Value=3.3e-13)
          Length = 482

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 26/63 (41%), Positives = 32/63 (50%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           + RG YS  +  + G   +L A PI G     RLFFAGE T    PATV  A  +G R A
Sbjct: 409 YVRGGYSASSAHAYGMRREL-AKPISG-----RLFFAGEATHVTNPATVQAAIETGRRAA 462

Query: 183 GRL 191
             +
Sbjct: 463 SEV 465


>SB_19364| Best HMM Match : zf-C5HC2 (HMM E-Value=5)
          Length = 246

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 24/62 (38%), Positives = 34/62 (54%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           +A  +YS+V VG SG +YD LA  I G     +++FAGE  + +Y  T H A +    E 
Sbjct: 18  YASMAYSYVPVGCSGQEYDDLAQDIDG-----KVYFAGEIIVCDYTET-HSAVVCDYTET 71

Query: 183 GR 188
            R
Sbjct: 72  LR 73


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 25/68 (36%), Positives = 32/68 (47%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           + RG YS     + G  + L A+P+ G     RLFFAGE T     ATV  A  +G R A
Sbjct: 221 YVRGGYSSPTALAHGLRHHL-ASPVSG-----RLFFAGEATNVKVSATVPSAIETGERAA 274

Query: 183 GRLADMLL 206
             +    L
Sbjct: 275 EEVLQQAL 282


>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 3    FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGL 173
            + RG+YS   + +   D+D +  P+      + LFFAGE T   +   + GA+L+ +
Sbjct: 937  YTRGAYSDPTLDARPCDFDNMLLPL------DTLFFAGEATSEEWTGYMQGAYLTAI 987


>SB_38989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +3

Query: 3   FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
           + RG YS     + G  + L A+ + G     RLFFAGE T     ATV  A  +G R A
Sbjct: 32  YVRGGYSSPTARAHGLRHHL-ASSVSG-----RLFFAGEATNVKVSATVPSAIETGERAA 85

Query: 183 GRLADMLL 206
             +    L
Sbjct: 86  EEVLQQAL 93


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 24/68 (35%), Positives = 31/68 (45%)
 Frame = +3

Query: 3    FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
            + RG YS     + G  + L A+ + G     RLFFAGE T     ATV  A  +G R A
Sbjct: 2197 YVRGGYSSPTARAHGLRHHL-ASSVSG-----RLFFAGEATNVKVSATVPSAIETGERAA 2250

Query: 183  GRLADMLL 206
              +    L
Sbjct: 2251 EEVLQQAL 2258


>SB_55379| Best HMM Match : SAM_2 (HMM E-Value=3e-05)
          Length = 1088

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -2

Query: 340 ELFLNIINFTLDRNFQGLSLIVFSHHAELFAVTAATLELVIGGRGSNMSANLPASLKPD 164
           EL +N+     + NF+ +S+ + S   +      ATL  V G  G +M+ NLP +L  D
Sbjct: 316 ELSVNLDPIYEEINFRKMSIELESD-VDTQKADGATLGYVCGPEGDSMTQNLPTNLNED 373


>SB_15624| Best HMM Match : Phage_G (HMM E-Value=9.5)
          Length = 288

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -2

Query: 256 LFAVTAATLELVIGGRGSNMSANLPASLKPDKNAPCTVAG*FRIVCSPAKKSLFSPSVP 80
           LF ++  +L+L I G G N S    ASL+ ++ +P T       V  P    LF   +P
Sbjct: 17  LFPISVFSLKLNITGSGGNYSLGFIASLRIEEWSPVTSGVPQGTVLGPVLSLLFINDMP 75


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = -1

Query: 581 HSVFPMTSNNCSITNAAHRRLLSPQMTSHISVTTIVSYSLIQR---STLVTSIHYG*LVT 411
           H++     N+  +T A H  ++  +  +HI VT I +++++ R     +VT IH   +VT
Sbjct: 17  HNMVTRIHNHIMVTRA-HNHIMVTRAHNHIMVTRINNHNMVTRINNHNMVTRIHNHNMVT 75

Query: 410 N 408
           +
Sbjct: 76  S 76


>SB_17636| Best HMM Match : RPE65 (HMM E-Value=7.8e-12)
          Length = 366

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 480 YCIVFIDTKINISYFDTLWLAS 415
           +C V +DTK N+S+ + +WL++
Sbjct: 178 FCAVCLDTKFNMSFDNEVWLSN 199


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -1

Query: 599 NYEYIIHSVFPMTSNNCSITNAAHRRLLSPQMTSHISVTTIVSYSLIQRSTLVTSIHYG* 420
           N  Y+I +V  +T+    ITN A    ++  +T+   + T V+Y +   + L+T++ Y  
Sbjct: 26  NMAYLITNVAVITNMAYLITNVAVITNMAYLITNMAYLITNVAYLITNMAYLITNMAY-- 83

Query: 419 LVTN 408
           L+TN
Sbjct: 84  LITN 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,341
Number of Sequences: 59808
Number of extensions: 436975
Number of successful extensions: 935
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)