Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0246
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of... 57 1e-08
AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical ... 57 1e-08
Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical pr... 52 3e-07
Z81512-6|CAB04171.3| 455|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical pr... 41 8e-04
AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical ... 36 0.030
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 30 1.9
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 30 1.9
U64852-8|AAB04971.3| 168|Caenorhabditis elegans Molybdenum cofa... 29 4.5
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 28 5.9
U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm recept... 28 7.9
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AY152852-1|AAN62580.1| 770|Caenorhabditis elegans suppressor of
presenilin 5 protein.
Length = 770
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/64 (37%), Positives = 44/64 (68%)
Frame = +3
Query: 6 ARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAG 185
A GS +F+++ + T +D + P+ +DG +R++FAGEHT +Y +T+ GA++SG R A
Sbjct: 615 AFGSGAFMSLRTETTSFDDVMEPLKTSDGMSRVYFAGEHTCSSYTSTIQGAWMSGARAAA 674
Query: 186 RLAD 197
+++
Sbjct: 675 DISN 678
>AL032636-3|CAA21604.1| 770|Caenorhabditis elegans Hypothetical
protein Y40B1B.6 protein.
Length = 770
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/64 (37%), Positives = 44/64 (68%)
Frame = +3
Query: 6 ARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAG 185
A GS +F+++ + T +D + P+ +DG +R++FAGEHT +Y +T+ GA++SG R A
Sbjct: 615 AFGSGAFMSLRTETTSFDDVMEPLKTSDGMSRVYFAGEHTCSSYTSTIQGAWMSGARAAA 674
Query: 186 RLAD 197
+++
Sbjct: 675 DISN 678
>Z50756-1|CAA90637.2| 737|Caenorhabditis elegans Hypothetical
protein T08D10.2 protein.
Length = 737
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/70 (40%), Positives = 42/70 (60%)
Frame = +3
Query: 6 ARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAG 185
A G+ +F+++ + +D L P+ DG+ R+FFAGEHT T+ GAF SGLR A
Sbjct: 645 AFGTGTFMSLRTEPQHFDALKEPLKTRDGKPRVFFAGEHTSALEHGTLDGAFNSGLRAAA 704
Query: 186 RLADMLLPLP 215
LA+ + +P
Sbjct: 705 DLANTCIEIP 714
>Z35602-2|CAA84671.3| 824|Caenorhabditis elegans Hypothetical
protein R13G10.2 protein.
Length = 824
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 3 FARGSYSFVAVGSSG-TDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLRE 179
F SY+FV GS G Y+ L I + +L+FAGEHT+ P T+ GA++SGLRE
Sbjct: 754 FVGMSYTFVPFGSDGDATYNQLKKSI-----DEKLYFAGEHTIAAEPQTMAGAYISGLRE 808
Query: 180 AGRL 191
AG++
Sbjct: 809 AGQI 812
>Z81512-6|CAB04171.3| 455|Caenorhabditis elegans Hypothetical
protein F25C8.2 protein.
Length = 455
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 FARGSYSFVAVGSS-GTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLRE 179
F GSYS++ G G D +LA P+ D + FAGEHT T GA SGLRE
Sbjct: 386 FTLGSYSYLTPGQIVGEDICILAQPVL-KDNNPVICFAGEHTDSTMYQTTVGAVRSGLRE 444
Query: 180 AGRLAD 197
A R+++
Sbjct: 445 ASRISE 450
>Z78198-5|CAB01571.1| 437|Caenorhabditis elegans Hypothetical
protein F55C5.6 protein.
Length = 437
Score = 41.1 bits (92), Expect = 8e-04
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +3
Query: 3 FARGSYSFVAVG---SSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGL 173
FARGSYS+++ S+ D +L P+ + + + FAGEHT T GA SGL
Sbjct: 366 FARGSYSYISENTCHSNTDDIKILRDPVL-RNRKPIICFAGEHTDSKMYQTAVGASRSGL 424
Query: 174 REAGRL 191
REA R+
Sbjct: 425 READRI 430
>AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical
protein C24G6.6 protein.
Length = 527
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 12 GSYSFVAV--GSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAG 185
GSYS++ S + LA P+ +G ++ FAGE T T G +LSG REA
Sbjct: 429 GSYSYMTQVQALSHISHSQLAIPVK-LEGRPKVLFAGEATHHRLFQTTIGGYLSGRREAD 487
Query: 186 R 188
R
Sbjct: 488 R 488
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 335 VLKYYQFHLRSKFSGFKFNCFQPSCG 258
VLKYY+ K + + C QPSCG
Sbjct: 96 VLKYYKIDENGKITRLRKECQQPSCG 121
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 335 VLKYYQFHLRSKFSGFKFNCFQPSCG 258
VLKYY+ K + + C QPSCG
Sbjct: 96 VLKYYKIDENGKITRLRKECQQPSCG 121
>U64852-8|AAB04971.3| 168|Caenorhabditis elegans Molybdenum
cofactor biosynthesisprotein 2 protein.
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 310 LDRNFQGLSLIVFSHHAELFAVTAATLE-LVIGGRGSNMSANLPASLKPDK 161
+DR GL + + H A L + A L ++G RG + N+P S+K K
Sbjct: 90 IDRRCSGLEIAL--HTASLKITSMAALSRAIVGIRGGTLIVNMPGSVKAVK 138
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 638 IRIFGIKRYIYSINYEYIIHSVFPMTSNNCSITNAAHRRLLS 513
I + GI + SI + +H + P+TSN+ ++ NAA+ L S
Sbjct: 30 IIVSGIYVTMVSITGQNFLHPLSPVTSNSLNLQNAANEVLHS 71
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 638 IRIFGIKRYIYSINYEYIIHSVFPMTSNNCSITNAAHRRLLS 513
I + GI + SI + +H + P+TSN+ ++ NAA+ L S
Sbjct: 30 IIVSGIYVTMVSITGQNFLHPLSPVTSNSLNLQNAANEVLHS 71
>U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm receptor
protein 145 protein.
Length = 343
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 522 VTVATNDVTHLRYYYCIVFIDTKINISYFDTL 427
+ + T V H++ CIVF+D+ ++ YF TL
Sbjct: 54 IEILTQPVIHIKSPVCIVFMDS--SLKYFKTL 83
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 133 TIQQRCTEHSYRV*GKLGDWPTCC--FLCHQSLARVSLP*RQTIPHDG 270
T Q +HS + G+L DW T C LC + V L Q IP DG
Sbjct: 180 TRQMTVLQHSLEILGRLSDWSTTCRENLCESNTIDVCL---QLIP-DG 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,456,910
Number of Sequences: 27780
Number of extensions: 337862
Number of successful extensions: 756
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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