Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0246
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM do... 85 6e-17
At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM do... 83 2e-16
At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM do... 78 7e-15
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 71 8e-13
At4g29720.1 68417.m04232 amine oxidase family protein similar to... 63 2e-10
At2g43020.1 68415.m05339 amine oxidase family protein similar to... 45 4e-05
At3g59050.1 68416.m06582 amine oxidase family protein similar to... 42 3e-04
At5g13700.1 68418.m01595 polyamine oxidase, putative similar to ... 40 0.002
At1g65840.1 68414.m07470 amine oxidase family protein similar to... 31 0.78
At3g45150.1 68416.m04873 TCP family transcription factor, putati... 29 4.2
At3g28110.1 68416.m03508 hypothetical protein 29 4.2
>At1g62830.1 68414.m07093 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 844
Score = 84.6 bits (200), Expect = 6e-17
Identities = 40/63 (63%), Positives = 49/63 (77%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F+ GSYS+VAVGSSG DYD+LA + G+ R+FFAGE T R YPAT+HGAFLSG+REA
Sbjct: 645 FSYGSYSYVAVGSSGDDYDILAESV----GDGRVFFAGEATNRQYPATMHGAFLSGMREA 700
Query: 183 GRL 191
+
Sbjct: 701 ANI 703
>At3g10390.1 68416.m01245 amine oxidase family protein / SWIRM
domain-containing protein contains Pfam profile: PF01593
Flavin containing amine oxidase
Length = 789
Score = 82.6 bits (195), Expect = 2e-16
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
F+ GSYS VAVG+SG DYD+LA + G+ RLFFAGE T R YPAT+HGAF++GLREA
Sbjct: 561 FSLGSYSNVAVGASGDDYDILAESV----GDGRLFFAGEATTRRYPATMHGAFVTGLREA 616
Query: 183 GRLA 194
+A
Sbjct: 617 ANMA 620
>At3g13682.1 68416.m01728 amine oxidase family protein / SWIRM
domain-containing protein similar to polyamine oxidase
isoform-1 [Homo sapiens] GI:14860862; contains Pfam
profile:PF01593 Flavin containing amine oxidase
Length = 746
Score = 77.8 bits (183), Expect = 7e-15
Identities = 38/60 (63%), Positives = 45/60 (75%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREAGRL 191
GSYS V VGSSG DYD+LA + NRLFFAGE T R +PAT+HGA+LSGLREA ++
Sbjct: 539 GSYSHVRVGSSGVDYDILAESV-----SNRLFFAGEATTRQHPATMHGAYLSGLREASKI 593
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 70.9 bits (166), Expect = 8e-13
Identities = 33/67 (49%), Positives = 49/67 (73%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
++ G+YS+VA+G+SG DYD+L P+ +N LFFAGE T + +P TV GA ++G+REA
Sbjct: 1026 YSYGAYSYVAIGASGEDYDVLGRPV-----QNCLFFAGEATCKEHPDTVGGAMMTGVREA 1080
Query: 183 GRLADML 203
R+ D+L
Sbjct: 1081 VRIIDIL 1087
>At4g29720.1 68417.m04232 amine oxidase family protein similar to
polyamine oxidase isoform-2 [Homo sapiens] GI:16554963;
contains Pfam profile PF01593: amine oxidase,
flavin-containing
Length = 533
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/75 (50%), Positives = 46/75 (61%), Gaps = 14/75 (18%)
Frame = +3
Query: 9 RGSYSFVAVGSSGTDYDLLAAPIP----------GTDG----ENRLFFAGEHTMRNYPAT 146
RGSYS+VAVGSSG D D +A P+P G D E ++ FAGE T R + +T
Sbjct: 451 RGSYSYVAVGSSGDDLDAMAEPLPKINKKVGQVNGHDQAKVHELQVMFAGEATHRTHYST 510
Query: 147 VHGAFLSGLREAGRL 191
HGA+ SGLREA RL
Sbjct: 511 THGAYYSGLREANRL 525
>At2g43020.1 68415.m05339 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 490
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
GSYS+ VG Y+ L P+ + LFFAGE T ++P +VHGA+ +GL A
Sbjct: 404 GSYSYDIVGKPHDLYERLRVPV------DNLFFAGEATSSSFPGSVHGAYSTGLMAA 454
>At3g59050.1 68416.m06582 amine oxidase family protein similar to
polyamine oxidase (EC 1.5.3.11) precursor - Zea mays
[SP|O64411]; contains Pfam profile PF01593 amine
oxidase, flavin-containing
Length = 488
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/57 (40%), Positives = 32/57 (56%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGLREA 182
GSYS+ V Y+ L P+ + LFFAGE T +YP +VHGA+ +G+ A
Sbjct: 405 GSYSYDIVNKPHDLYERLRVPL------DNLFFAGEATSSSYPGSVHGAYSTGVLAA 455
>At5g13700.1 68418.m01595 polyamine oxidase, putative similar to
SP|O64411 Polyamine oxidase precursor (EC 1.5.3.11) from
Zea mays
Length = 472
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 3 FARGSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGL 173
F RGSYS + S + AP+ R+FF GEHT + VHG +L+G+
Sbjct: 373 FQRGSYSNYPMISDNQLLQNIKAPV------GRIFFTGEHTSEKFSGYVHGGYLAGI 423
>At1g65840.1 68414.m07470 amine oxidase family protein similar to
polyamine oxidase SP:O64411 [Zea mays]; contains Pfam
profile PF01593 amine oxidase, flavin-containing
Length = 497
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 12 GSYSFVAVGSSGTDYDLLAAPIPGTDGENRLFFAGEHTMRNYPATVHGAFLSGL 173
G Y++ VG Y L P+ + +FF GE + + HGAFL+G+
Sbjct: 406 GCYAYDVVGMPEDLYPRLGEPV------DNIFFGGEAVNVEHQGSAHGAFLAGV 453
>At3g45150.1 68416.m04873 TCP family transcription factor, putative
similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
Oryza sativa] ; auxin-induced basic helix-loop-helix
transcription factor - Gossypium hirsutum, EMBL:AF165924
Length = 165
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 608 YSINYEYIIHSVFPMTSNNCSITNAAHRRLLSP--QMTSHISVTTIVSYSLIQRST 447
Y+ N + I ++VFP C++ N HR+++ P MT H T + S ST
Sbjct: 93 YTFNGDNISNNVFP-----CTVVNTGHRQMVFPVSTMTDHAPSTNYSTISDNYNST 143
>At3g28110.1 68416.m03508 hypothetical protein
Length = 354
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 436 EVTNVDLCINEYDTIVVTEMCDVICGDSN 522
EVTNVD N Y+ I V E D+ GD N
Sbjct: 120 EVTNVDAAHNFYEDINVDEEDDIDEGDEN 148
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,219,672
Number of Sequences: 28952
Number of extensions: 301394
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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