Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.5  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   3.5  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 79  PRSTPPLSTPSNSNATKSS 97


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 163 PRSTSPLPAPANYQPTTAS 219
           PRST PL  P+N   T +S
Sbjct: 123 PRSTPPLSTPSNSNATKSS 141


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 453 PDCGQSCIIHAVCGVR*FHRSRNTGLHIILVPEQQAP 563
           PDCGQ+C+      +       N  + ++LV E Q+P
Sbjct: 560 PDCGQNCMCTHQVDI-----PLNAIVEVVLVDEVQSP 591


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +2

Query: 248 RDCSNLIKWTSNSPLGKWFTCSLPLRKYSETLTIG 352
           +DC   + W S +P     TC     +Y     +G
Sbjct: 94  KDCGEYVDWCSTNPCENQATCVQNKNQYQCLCGVG 128


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 534 CGDQYSCSDEINEHHKQH 481
           CG +++ SDE+  H + H
Sbjct: 352 CGKRFTRSDELQRHLRTH 369


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 130  STSPTPNLHNYPRSTSPLPAPANYQP 207
            ST+  P   N+P   + +P PA   P
Sbjct: 1069 STTTRPTTTNWPTQGTTIPPPAVVMP 1094


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 152 FITILGALHPCQPR 193
           F+TIL ++H  QPR
Sbjct: 97  FLTILNSMHKYQPR 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,152
Number of Sequences: 336
Number of extensions: 3547
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)