Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0245
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po... 81 2e-16
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.7
SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 2.2
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.1
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 26 6.7
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 26 6.7
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.9
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 8.9
>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 235
Score = 80.6 bits (190), Expect = 2e-16
Identities = 36/107 (33%), Positives = 67/107 (62%)
Frame = +1
Query: 250 RLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSS 429
RL K +QMDFE A W M LF AP++V+R+ RK +++ R+D +F+VL S + +S+
Sbjct: 10 RLLKLSQMDFERAWWDMANLFRAPRRVYRSITLRKQNINRYGREDFSFIVLFSCMIVISA 69
Query: 430 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRR 570
+ + L T + F++FVDF G++++T++++++ + L +
Sbjct: 70 LLWALFYMNTPKGYVTTITFMLFVDFGAVGVIMATMYYFIAKRFLMK 116
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYY 755
EW Y FDVH N+FFP LL+ Q+ L ++++ F+S + NT +L ++ YY
Sbjct: 130 EWNYCFDVHCNSFFPSFVLLYVIQLFLL-PVITRDNFISLFMGNTLYLVALCYY 182
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 531 HIILVPEQQAP-APRPRGSRTWEWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFV 707
H+I + + P +P PRGS +W + + ++ L F+ L + + AG+
Sbjct: 36 HLIYILNRYQPISPNPRGSLNSKWYHLLQIPLSNRHTDLEENTEFKANLVSPVDFHAGYC 95
Query: 708 SXLVSNTFWLASIIYYM 758
+ + W I ++
Sbjct: 96 FAAILSISWATGFILFL 112
>SPAPB18E9.05c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 90
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 394 LVLLSIWLFLSSICFGLALDLT 459
LV +S WLF S+ICFG++L L+
Sbjct: 44 LVSMS-WLFRSTICFGVSLFLS 64
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 430 ICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLS 552
+CF L++ + + ++ + F F+GA + V+T FW+ S
Sbjct: 247 LCFAAPLNILLNYLLVWHPTIGF-GFLGAPVAVATTFWFQS 286
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = -2
Query: 551 LRYQNNVETSIPAPMKXXXXXXXXXXXTLPTVRSSANPKHIDDKNNQMLSNTKN 390
L ++ N PAP +P + SA KH N++L+NT N
Sbjct: 368 LNFRGNRYVEFPAPYDDYTTNQILLEDYMPGIPLSAFLKHKSGPFNKLLANTGN 421
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 145 PNLHNYPRSTSPLPAPANYQPTTASASVKRYK 240
P+ NYP S+ P+P Y ++ S RY+
Sbjct: 309 PHSSNYPSSSRRKPSPDRYSNYSSRGSGGRYR 340
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 121 MKYSTSPTPNLHNYPRSTSP 180
MKY TP YPRST P
Sbjct: 426 MKYLQIDTPESKEYPRSTRP 445
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 124 KYSTSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKF 264
++STS P+L S+ P+P+ + +T+ AS K +Y K L F
Sbjct: 24 RWSTSHIPSLSEINPSSFQSPSPSPFASSTSLAS-KPARYSKPLGLF 69
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 564 APRPRGSRTWEW 599
+P PRG + WEW
Sbjct: 385 SPGPRGQKAWEW 396
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 169 STSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDF 279
S P P + PT++S S ++ KRL+ F F
Sbjct: 67 SLPPFDHPPSKNPTSSSLSTRKRWRQKRLWSFKNFPF 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,463
Number of Sequences: 5004
Number of extensions: 58735
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -