Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0592 + 26477974-26479311                                         31   0.76 
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     30   2.3  
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965...    28   7.1  
08_01_0619 + 5412058-5413224,5413357-5413476,5413755-5413831,541...    28   9.3  
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    28   9.3  

>04_04_0592 + 26477974-26479311
          Length = 445

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 139 PTPNLHNYPRSTSPLP---APANYQPTTASASVKRYK-YLKRLFKFNQMDFEFAAWQMVY 306
           PTP     P  T PLP    PA+   +   AS KR K  LK L +       FAA +   
Sbjct: 89  PTPTTTTTPTPTPPLPPPAPPASPAKSNKKASAKRNKSLLKLLLRETPRTRRFAA-RAGE 147

Query: 307 LFIAPQKVFRNF 342
           LF +P+   R F
Sbjct: 148 LFASPRPCTRRF 159


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 PTPNLHNYPRSTSPLPAPANYQPTTASASV 228
           P+P   + P STSP P PA  +P+   ASV
Sbjct: 41  PSPPRASIPVSTSPAPLPAPAKPSLPGASV 70


>01_06_0205 -
           27495030-27495128,27495397-27496265,27496352-27496511,
           27497136-27497208,27497311-27497430,27498454-27498618,
           27498695-27498785,27499381-27499465,27499555-27499740,
           27499843-27499899,27499998-27500282
          Length = 729

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +1

Query: 130 STSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYL 309
           + SP P LHN   +TS L   A+     A  S+    Y  RL   +Q +F    W+ +  
Sbjct: 253 NASPFPALHNQISNTSSLSEVAH---AVAVKSIFHIYYNPRL---SQSEFIIPYWKFMRS 306

Query: 310 FIAPQKVFRNFNYRKHTKSQFAR 378
           F  P  V   F  R  ++    R
Sbjct: 307 FSQPFSVGMRFKLRYESEDASER 329


>08_01_0619 +
           5412058-5413224,5413357-5413476,5413755-5413831,
           5414201-5414321
          Length = 494

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 124 KYSTSPTPNLHNYPRSTSPLPAPANYQPTTASA 222
           K++T+P P  H+ P  + P P P    P    A
Sbjct: 30  KHATNPNPRRHHRPSPSIPPPPPPQRPPAATVA 62


>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 145 PNLHNYPRSTSPLPAP-ANYQPTTASASVK 231
           PN   YP  +SP PAP  +Y PT A  + +
Sbjct: 83  PNPAPYPPESSPAPAPYYSYPPTAAGVATQ 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,466,897
Number of Sequences: 37544
Number of extensions: 397282
Number of successful extensions: 1239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)