Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0245
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36) 29 4.1
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 29 4.1
SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_30961| Best HMM Match : I-set (HMM E-Value=0) 28 7.2
SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_25446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 66.1 bits (154), Expect = 3e-11
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +3
Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYYM 758
EWGYAFDVH+NAFFP L +LH Q+ I+ F+S + NT WL +++YY+
Sbjct: 58 EWGYAFDVHLNAFFPLLIILHVVQLFF---IIDHPWFISRFIGNTLWLIALVYYV 109
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = +1
Query: 229 KRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNY 348
+R+KYLKR+ KF MDFEFA WQM+YL ++PQKV Y
Sbjct: 5 RRWKYLKRILKFRHMDFEFALWQMLYLCVSPQKVIVTNRY 44
>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 154 HNYPRSTSPLPAPANYQPTTASASVKR 234
H YP P+P P +Y P + + S KR
Sbjct: 193 HYYPTIAEPVPGPGSYNPRSYTTSSKR 219
>SB_15290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 537 ILVPEQQAPAPRPRGSRTWEWGYAFD 614
I +PE + PA + S TWE G +FD
Sbjct: 29 IFLPESKVPANIKKSSETWEDGISFD 54
>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
Length = 338
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 621 INAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFW 734
+NAF P HCFQ V+F+S S LVS F+
Sbjct: 204 LNAFHRPYHCGHCFQSVVFSSNARFPRQKSELVSQRFF 241
>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 151 LHNYPRST-SPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAW 294
+ N+P +T SP+ +P Y AS+ RY+ L+ + ++D+ W
Sbjct: 392 MSNWPSTTKSPIDSPMKYFSCGASSVKDRYRLLRESCQSEKLDYLRCNW 440
>SB_19650| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 300
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 199 YQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFAR 378
Y + + V Y YL + F + F A+++ L + R+F +H S+
Sbjct: 191 YDKSVPAFGVMLYSYLVLFYVFPCIILSFVAFRVTRLLNRRRTPRRSF---QHKGSRLLI 247
Query: 379 DDP-AFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVF 498
+ AF+V S+W+ L+++ + +LT + + L V+F
Sbjct: 248 NVLIAFVVPYSLWVLLTALRLVINPELTYQQDTIVPLLVIF 288
>SB_8021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 390 CRVVSRKL*FCMLPIVKVSEYFLRGNEQVNHLPSGEFEVHLIKFEQSLEVFVA 232
CR+V L + +P +K+S + N NH+P+ EF + + + ++ F+A
Sbjct: 20 CRIVQGHLIYRRVPCLKISTKIIDDN---NHVPTIEFALRKMSDDATVVTFLA 69
>SB_20760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 139 PTPNLHNYPRSTSPLPAPANYQPT-----TASASVKRYKYLKRLF 258
P PN + YP + PA A Y+ T T SA V R+ Y F
Sbjct: 185 PGPNPNEYPATNMTNPANARYRKTGLTGLTGSADVVRFMYASVTF 229
>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
Length = 1018
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 275 TSNSPLGKWFTCSLPLRKYSETLTIGSIQNHSLRETTLHS*CCSASGY 418
T+N+ GK + S L + + S +NHS+ E T S C+A+G+
Sbjct: 221 TANNSFGKPVSASFFLTVQYKPSIVTSPRNHSILEGTRLSLYCNATGF 268
>SB_14464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 118 KMKYSTSPTPNLHNYPRSTSPLPAP 192
K K ++SPTP N +TSP P P
Sbjct: 30 KPKTTSSPTPTRPNTTATTSPTPTP 54
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,243,719
Number of Sequences: 59808
Number of extensions: 453013
Number of successful extensions: 1245
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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