Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113422-1|AAM29427.1|  275|Drosophila melanogaster RE19904p pro...   182   5e-46
AE014297-785|AAF54267.1|  275|Drosophila melanogaster CG9773-PA ...   182   5e-46

>AY113422-1|AAM29427.1|  275|Drosophila melanogaster RE19904p
           protein.
          Length = 275

 Score =  182 bits (443), Expect = 5e-46
 Identities = 87/159 (54%), Positives = 116/159 (72%), Gaps = 4/159 (2%)
 Frame = +1

Query: 121 MKYSTSPTPNL----HNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFA 288
           +KY+ SPTP++     +  R  SPLP PAN++    SA+ K YKYL+RL KFNQMDFEFA
Sbjct: 7   VKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYKYLRRLLKFNQMDFEFA 66

Query: 289 AWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGK 468
            WQM+YLF+APQKV+RNFNYRK TKSQFARDDPAFLVLL + L ++S+ F   L L+  +
Sbjct: 67  LWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQ 126

Query: 469 VALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPEGP 585
              F+ +VVFVD I  GI++++ FW ++N++LR +   P
Sbjct: 127 SISFIFYVVFVDCIFVGIIIASFFWAVTNRYLRTNSLEP 165



 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 32/55 (58%), Positives = 41/55 (74%)
 Frame = +3

Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYYM 758
           EWGYAFDVH+NAFFPPL LLH  Q+  +N ++SQ  F+S  + NTFWL  + YY+
Sbjct: 168 EWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLISQTWFISRFLGNTFWLMGMGYYV 222


>AE014297-785|AAF54267.1|  275|Drosophila melanogaster CG9773-PA
           protein.
          Length = 275

 Score =  182 bits (443), Expect = 5e-46
 Identities = 87/159 (54%), Positives = 116/159 (72%), Gaps = 4/159 (2%)
 Frame = +1

Query: 121 MKYSTSPTPNL----HNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFA 288
           +KY+ SPTP++     +  R  SPLP PAN++    SA+ K YKYL+RL KFNQMDFEFA
Sbjct: 7   VKYTQSPTPSVVSGYSSASRLHSPLPPPANHRRDCLSATTKSYKYLRRLLKFNQMDFEFA 66

Query: 289 AWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGK 468
            WQM+YLF+APQKV+RNFNYRK TKSQFARDDPAFLVLL + L ++S+ F   L L+  +
Sbjct: 67  LWQMLYLFVAPQKVYRNFNYRKQTKSQFARDDPAFLVLLVVCLCVTSLGFAYVLGLSFWQ 126

Query: 469 VALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRRDPEGP 585
              F+ +VVFVD I  GI++++ FW ++N++LR +   P
Sbjct: 127 SISFIFYVVFVDCIFVGIIIASFFWAVTNRYLRTNSLEP 165



 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 32/55 (58%), Positives = 41/55 (74%)
 Frame = +3

Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYYM 758
           EWGYAFDVH+NAFFPPL LLH  Q+  +N ++SQ  F+S  + NTFWL  + YY+
Sbjct: 168 EWGYAFDVHLNAFFPPLMLLHFIQLFFYNWLISQTWFISRFLGNTFWLMGMGYYV 222


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,173,262
Number of Sequences: 53049
Number of extensions: 677685
Number of successful extensions: 2311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2309
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)