Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical...    28   8.3  

>Z48055-4|CAA88132.2|  301|Caenorhabditis elegans Hypothetical
           protein T07A5.2 protein.
          Length = 301

 Score =  133 bits (321), Expect = 1e-31
 Identities = 63/118 (53%), Positives = 82/118 (69%)
 Frame = +1

Query: 217 SASVKRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKHTKSQFARDDPAFL 396
           SA  K  ++ +RL    QMDFEFA WQM+YL I P KV++NF YRK TK QFARDDPAFL
Sbjct: 59  SAFAKLSRFTRRLVHIRQMDFEFALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDDPAFL 118

Query: 397 VLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKHLRR 570
           VLL++ L  SSI +  AL L       F L+ VFVD IG G++++T+ W++SN+ LR+
Sbjct: 119 VLLALSLLFSSIFYAYALGLEKIGFFTFFLWSVFVDCIGVGVVIATVLWWVSNRFLRK 176



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 27/55 (49%), Positives = 37/55 (67%)
 Frame = +3

Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYYM 758
           EWGY FDVH+NAFFP L LLH    +L+ +++    F+S L+ NTFW  +  YY+
Sbjct: 183 EWGYCFDVHLNAFFPMLILLHVIVPILYPTLIDSPAFLSILLGNTFWFLAACYYV 237


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +2

Query: 269 KWTSNSPLGKWFTCSLPLRKYSETLTIGSIQNHSLRETTLHS----*CCSASG-YFCRQY 433
           K  ++ P G+ + C L  +  S      ++ NH  R   LH+     CC   G  F R+Y
Sbjct: 198 KAKADEPFGELYQCQLCKKSISRHGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRY 257

Query: 434 VSDWH 448
           ++  H
Sbjct: 258 LASTH 262


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +2

Query: 269 KWTSNSPLGKWFTCSLPLRKYSETLTIGSIQNHSLRETTLHS----*CCSASG-YFCRQY 433
           K  ++ P G+ + C L  +  S      ++ NH  R   LH+     CC   G  F R+Y
Sbjct: 198 KAKADEPFGELYQCQLCKKSISRHGQYANLLNHLSRHARLHASKKQYCCPKCGASFTRRY 257

Query: 434 VSDWH 448
           ++  H
Sbjct: 258 LASTH 262


>Z70206-1|CAA94124.1|  407|Caenorhabditis elegans Hypothetical
           protein C49F8.1 protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 145 PNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAA 291
           P L  YP  ++  PAP   QPT  +  ++  +  + L  FN  DF+  A
Sbjct: 273 PQLSQYPSPSTAAPAPVPEQPTLNNLPLEVKQSAQTL--FNDPDFQMLA 319


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 142 TPNLHNYPRSTSPLPAPANYQPTTASASV 228
           TP+    P STS  P P+   PTT  ++V
Sbjct: 484 TPSTQGVPTSTSNQPTPSTSNPTTPKSTV 512


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 118 KMKYSTSPTPNLHNYPRSTSPLPAPANYQPTTASA 222
           K+      +P++  YPR  +P  + ANY  TT+++
Sbjct: 362 KLNQPADTSPSIVQYPRRQAPDSSRANYSATTSTS 396


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 452 SSANPKHIDDKNNQMLSNTKNAGSSLANCD 363
           S+  P    D+N    SN++N+ + LA CD
Sbjct: 736 SNVTPTSGGDQNQNQQSNSRNSSAELAGCD 765


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 452 SSANPKHIDDKNNQMLSNTKNAGSSLANCD 363
           S+  P    D+N    SN++N+ + LA CD
Sbjct: 736 SNVTPTSGGDQNQNQQSNSRNSSAELAGCD 765


>Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical
           protein T06H11.1b protein.
          Length = 553

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +1

Query: 391 FLVLLSIWLFLSSICFGLALDLTVG----KVALFMLFVVFVDFIGAGILVSTLFWYLSNK 558
           F+     W F+ +  FG  L +TVG     V  ++   + V F+  G+ V T+   L++ 
Sbjct: 381 FITWERTWSFIHAFHFGFNLIVTVGLGDIVVTDYIFLSLIVAFVIVGLSVVTMCVDLAST 440

Query: 559 HLR 567
           HL+
Sbjct: 441 HLK 443


>Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical
           protein T06H11.1a protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +1

Query: 391 FLVLLSIWLFLSSICFGLALDLTVG----KVALFMLFVVFVDFIGAGILVSTLFWYLSNK 558
           F+     W F+ +  FG  L +TVG     V  ++   + V F+  G+ V T+   L++ 
Sbjct: 419 FITWERTWSFIHAFHFGFNLIVTVGLGDIVVTDYIFLSLIVAFVIVGLSVVTMCVDLAST 478

Query: 559 HLR 567
           HL+
Sbjct: 479 HLK 481


>AL031633-19|CAA21031.1|  710|Caenorhabditis elegans Hypothetical
           protein Y39A1A.22 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 603 YAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIY 752
           YA  +HI  F PPL+L+    I+L N I           ++ FWL    Y
Sbjct: 328 YAHMLHIPPFAPPLALMVVCLILLLNPIAKPDSVFHR--NSRFWLLKHCY 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,491
Number of Sequences: 27780
Number of extensions: 341042
Number of successful extensions: 1192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)