Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   1.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.4  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 448 LDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSNKH 561
           L  T   + L+M+ V+      A I + T+FW+L+ ++
Sbjct: 305 LTATAQMLGLYMVTVILGLLFHALITLPTIFWFLTRQN 342


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 540 K*CGDQYSCSDEINEHHKQH 481
           K CG  ++CS ++  H + H
Sbjct: 207 KACGKGFTCSKQLKVHTRTH 226


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 490  QTA*IMQLCPQSGLVPIRNILTTKI 416
            QTA I Q  PQ  ++P + +L ++I
Sbjct: 1001 QTANIKQQSPQQHVLPGKTLLASQI 1025


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +1

Query: 283 FAAWQMVYLFIAPQKVFRNFNYRKHTKS 366
           F AW +  +F  P   + + NY ++ ++
Sbjct: 155 FGAWLIALIFAMPFATYVDINYVEYPQN 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,694
Number of Sequences: 438
Number of extensions: 4423
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)