Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0245
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro...    97   8e-21
At5g44860.1 68418.m05499 expressed protein strong similarity to ...    30   1.9  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    30   1.9  
At5g38380.2 68418.m04636 expressed protein                             28   5.9  
At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containi...    28   5.9  
At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containi...    28   7.8  

>At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam
           profile PF05216: UNC-50 family; contains 5 transmembrane
           domains; similar to inner nuclear membrane RNA-binding
           protein unc-50 related protein (GI:2735550) [Rattus
           norvegicus]
          Length = 252

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 41/132 (31%), Positives = 82/132 (62%)
 Frame = +1

Query: 178 PLPAPANYQPTTASASVKRYKYLKRLFKFNQMDFEFAAWQMVYLFIAPQKVFRNFNYRKH 357
           P  + +    +++ A+    +Y +R+ K+ QMD E+  WQM+ L  +P+ V+++  Y K 
Sbjct: 3   PTTSRSRSSSSSSRANPMFLQYFRRIVKWQQMDVEYTFWQMLNLCTSPKVVYQHTKYHKQ 62

Query: 358 TKSQFARDDPAFLVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTL 537
           TK+Q+ARDDPAF+V+ S+ L ++++ + +  D +     + ++ V+F  F+  G +++T 
Sbjct: 63  TKNQWARDDPAFIVICSLLLVVATVAYCVTYDHSSSHAVVVVVSVLFTHFLITGAVIATC 122

Query: 538 FWYLSNKHLRRD 573
            W+L+N +LR +
Sbjct: 123 CWFLTNSYLREE 134



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 30/54 (55%)
 Frame = +3

Query: 594 EWGYAFDVHINAFFPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYY 755
           EW Y FDVH N+FFP   LL+     L + +L   GF+  L+SN  ++    YY
Sbjct: 146 EWLYTFDVHCNSFFPMFVLLYVVHYFL-SPLLIAHGFIPLLLSNLLFMVGASYY 198


>At5g44860.1 68418.m05499 expressed protein strong similarity to
           unknown protein (gb AAC79135.1)
          Length = 321

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/54 (31%), Positives = 33/54 (61%)
 Frame = +1

Query: 394 LVLLSIWLFLSSICFGLALDLTVGKVALFMLFVVFVDFIGAGILVSTLFWYLSN 555
           LV  S++L    +   +A+DL    +A+F + V+FV F+G  + + T +W+L++
Sbjct: 141 LVYNSVFLLFLVVLI-VAIDLQSVILAVFSMVVIFVLFLGVHVYM-TAWWHLAS 192


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 669 VLFNSILSQAGFVSXLVSNTFWLASII 749
           +L++S+L Q GFV    ++T+WLA  I
Sbjct: 730 LLWSSVLGQVGFVVFQAASTYWLAFAI 756


>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 406 SIWLFLSSICFGLALDLTVGKVALFMLFVVF 498
           S W FLS+I FG+ L   V  +A   L +VF
Sbjct: 228 SAWAFLSTIIFGIILIFYVDNIAEERLHMVF 258


>At3g14330.1 68416.m01812 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 710

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 112 EIKMKYSTSPTPNLHNYPRSTSPLPAPANYQPTTASASVKRYKYLK 249
           E   ++S S TP L+ +P  +  +  P  Y     S S+   K+L+
Sbjct: 46  ETSFEFSPSLTPELNEFPMPSLDVITPQAYLTPLGSQSINHAKFLQ 91


>At1g14470.1 68414.m01716 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 633 FPPLSLLHCFQIVLFNSILSQAGFVSXLVSNTFWLASIIYY 755
           FP L+ +H  Q+++FNS+  Q+ + S ++S    L +  YY
Sbjct: 19  FPQLNQIHA-QLIVFNSLPRQSYWASRIISCCTRLRAPSYY 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,836,502
Number of Sequences: 28952
Number of extensions: 308967
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)