Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0244
         (613 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   3.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   6.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 333  SVSWSIDCDLVTPKKCHELFPML 401
            +V+W+ID D  + + C   FP+L
Sbjct: 962  AVAWTIDLDDFSNRCCGGSFPLL 984


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 478 RDIQSKCGSPTPSPGIHRP 422
           R I+++C  PT    +HRP
Sbjct: 83  RSIKNECPEPTCDEPVHRP 101



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 417 LGGLWIPGDGVGDPHLLCM 473
           LG  WIP  GV    L CM
Sbjct: 45  LGSQWIPDLGVPIGVLYCM 63


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 454 SPTPSPGIHRPPSTSS 407
           S TP P   RPPST S
Sbjct: 405 STTPRPEWARPPSTPS 420


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 297 LLFLPIIVNHIVSTLWAYHEPQAP 226
           ++++      I++ LWA  +PQ+P
Sbjct: 271 VMYIACSTPFILAQLWATWDPQSP 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,956
Number of Sequences: 336
Number of extensions: 3319
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)