Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0244
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    29   0.53 
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   2.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   3.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.9  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.9  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   4.9  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   6.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.6  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1016

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 592  SIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS 452
            S++P  V+T    ++F  T  T   + TPTP + ++   ++ ++CGS
Sbjct: 926  SLSPNTVTTTKATTTFTPTPTT---TTTPTPTTTSATSTNVIAQCGS 969


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = -1

Query: 589 IAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
           +A F  +T  TLS  +S    E +S  PTP S + L         SP P+  I  P    
Sbjct: 189 LAVFKETTSSTLSHGNSVEADEINSFNPTPFSSSPL----HFTNSSPNPNSDIVTPDKQL 244

Query: 409 STFSIGNNS*HF-FGVTKSQSMLHDT 335
              S      H  F  T  +   HD+
Sbjct: 245 DVVSEHARYKHLPFTATLRKKSPHDS 270


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 571 STPDTLSS-FDSTAVTEQSSITPT--PLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 401
           S P + SS F S+  T  S I+ +  P + +S+   + S   SP+ +       STSSTF
Sbjct: 544 SIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTF 603

Query: 400 SIGNNS 383
           S  + S
Sbjct: 604 SSASTS 609


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 450 GDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIE 593
           GDP ++  S+  E+TD    V ++ + T   +   ++   + TNG IE
Sbjct: 331 GDPPIVLESIAFESTDSLTVVWKESTRTVFETVPWRILSSQATNGLIE 378


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 100  SLIFLYCEEWVQGVAGIHQALLEHSSQHLL 189
            S ++LY  EW+  +      LL   S+HLL
Sbjct: 1115 SQVYLYLREWINALFDRFTFLLGKESEHLL 1144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -1

Query: 592  SIAPFVVSTPDTLSSFDSTAVTEQSSIT--PTPLSVASLIRDIQSKCGSPTPSPG-IHRP 422
            S+AP     P   SS    A++  SS++  P P   AS+     +    P P  G  + P
Sbjct: 879  SMAPVRSPFPGA-SSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHP 937

Query: 421  PSTSST 404
            P+ S T
Sbjct: 938  PTASGT 943


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -1

Query: 295  LVLANNSEPHC 263
            +VLAN+SEPHC
Sbjct: 2113 MVLANDSEPHC 2123


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 291 TRDRMTVYRRMKSQSVSWSIDCDLVTPK 374
           + D  T  ++ K +SVSW  D DLV  K
Sbjct: 493 SNDEKTGNKKRKKKSVSWKPDNDLVQVK 520


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 568 TPDTLSSFDSTAVT---EQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 398
           T    SSF ++ V+   +QSS +   L+ +S      S   SPT S   H   S+SS+  
Sbjct: 72  TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLV 131

Query: 397 IGNNS 383
             ++S
Sbjct: 132 ASSSS 136


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 598 SHSIAPFVVST-PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 422
           SHS+   ++ T  D    F  + +T+  S      S +S+++       SPT +   H  
Sbjct: 199 SHSLHDILLDTNDDDHFPFTQSPLTKTKSFNDALTSSSSILKPCMPSIASPTSNRLSH-A 257

Query: 421 PSTSSTF 401
           PST + F
Sbjct: 258 PSTPNLF 264


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 529 TEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 404
           T  S  TP   +PL V S  +   +   +PTP+P ++     SST
Sbjct: 591 THSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPESST 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,735
Number of Sequences: 5004
Number of extensions: 53014
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)