Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0244
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0719 + 19716536-19716857,19716949-19717101,19717493-197177... 37 0.014
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 36 0.033
02_01_0327 - 2241228-2242509,2243227-2243247,2243299-2243614,224... 32 0.31
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 32 0.41
12_01_0045 - 354825-355504,355602-355776,355847-355927,357266-35... 31 0.54
04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422 31 0.72
01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878 30 1.7
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 29 2.2
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 2.2
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 29 2.9
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635 29 3.8
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115... 27 8.9
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 27 8.9
07_03_1544 - 27585581-27585757,27585986-27586091,27586246-275863... 27 8.9
>09_04_0719 +
19716536-19716857,19716949-19717101,19717493-19717707,
19717785-19717855,19717998-19718157,19718598-19718790,
19718936-19719091,19719229-19719317,19719602-19719695,
19719870-19720039
Length = 540
Score = 36.7 bits (81), Expect = 0.014
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Frame = +3
Query: 129 GAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEARG-----RPTGWKQCGSLLLART 293
G G W S G+ LA VR Q L E++ G GW + GSLL+ RT
Sbjct: 108 GQGYLWMSHRTPGSDTWELA-VRSKQLWEELAAEVDGLGGGGARERLGWMRTGSLLVGRT 166
Query: 294 RDRM-TVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWIPGD 443
+ M T+ R K+ S + I + ++ H L P L V G +++P D
Sbjct: 167 SEEMATLEERTKALSQA-GIRAECLSAASLHALEPELYVGHDGGAMFLPED 216
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 35.5 bits (78), Expect = 0.033
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = +3
Query: 321 MKSQSVSWSIDCDLVTPKKCHEL-FPMLNVEDVL-----GGLWIPGDGVGDPHLLCMSLM 482
+K Q + ID + + L PM+N VL GG+ P GVG + MSL
Sbjct: 248 IKDQQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGINYPVGGVGG---IAMSLA 304
Query: 483 REATDKGVGVMEDCSVTAVLSKDDKVSGVETTNG 584
DKG + +VT V+ ++ K GV +NG
Sbjct: 305 DGLVDKGSEIRYKANVTNVILENGKAVGVRLSNG 338
>02_01_0327 -
2241228-2242509,2243227-2243247,2243299-2243614,
2244232-2244496,2245887-2245985
Length = 660
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 156 GLVGAFKPTLAQVRLAQSSIRLLKELEARGRPTG--WKQCGSLLLARTRDRM 305
G A +P LA V A +L + EA RP G W +CG+++L +D++
Sbjct: 277 GSAAADRPRLAPVAAAMVDAQLPRAGEAIYRPQGHGWGRCGAMILGGGKDKV 328
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 126 VGA-GSRWHSSGLVGAFKPT-LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRD 299
VGA GSR G G +P+ + + ++Q S + L+ G G + C SLLL R
Sbjct: 95 VGAVGSRHDDGGGSGVVRPSGVTSIPVSQKSTNPFQGLDLAGERQGQQSCASLLLQAKRR 154
Query: 300 R 302
R
Sbjct: 155 R 155
>12_01_0045 -
354825-355504,355602-355776,355847-355927,357266-357498,
357921-358104
Length = 450
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = -2
Query: 471 YRANAGLLHHHL----ESTGLQAHLQHSALEIIHDISLV*LSH 355
YR G LH H+ E+TG Q + HS LE +H I++ ++H
Sbjct: 394 YRICDGQLHIHILDNHETTGPQRWIHHSELEEVHTITVERINH 436
>04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422
Length = 121
Score = 31.1 bits (67), Expect = 0.72
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 380 TFLWCN*VTIYAPRYRLTFHSSVNSHAVSCSCQ 282
+ +W T+ A R+R F S++ H C+CQ
Sbjct: 25 SIMWVKDPTMIAVRWRRAFRSAIQKHMALCNCQ 57
>01_06_0653 + 30891231-30891276,30891624-30892898,30893775-30893878
Length = 474
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -1
Query: 538 TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 392
T +T + +T +P++V++L+ + G+H+ + SST S+G
Sbjct: 109 TYITVGAEVTESPVNVSALVVPAMRNVHTALKKAGLHKKITISSTHSLG 157
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 450 GDPHLLCMSLMREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIECDYF 605
G H+ CM +M E +G + E+C K K+ + GA + +F
Sbjct: 250 GAEHIYCMRVMMEEVPEGEWLCEECENELEYEKKKKLEKSQLKVGASKSQFF 301
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 556 LSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 398
LSS DS T++ P+P++ + I++ SP PSP P S++ S
Sbjct: 53 LSSSDSD--TDEPPARPSPIAQLKTLASIRAPAPSPKPSPSPSPSPRRSTSAS 103
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 456 GLLHHHLESTGLQAHLQHSALEIIHDI 376
GL+ HHLE G HL++ +L H+I
Sbjct: 810 GLVDHHLEHIGKLVHLRYLSLRECHNI 836
>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
Length = 819
Score = 28.7 bits (61), Expect = 3.8
Identities = 25/76 (32%), Positives = 35/76 (46%)
Frame = -2
Query: 567 LQTLCRLSIAQLSQNNLPSHPHLYQLLLS*ETYRANAGLLHHHLESTGLQAHLQHSALEI 388
L L L A S ++LPSH HL LS + +A H S+ L L + L +
Sbjct: 104 LSHLLSLRSASASLSSLPSHLHLLSSHLSLLSSHLSAPRAHLAHSSSSLSTLLSTADL-L 162
Query: 387 IHDISLV*LSHNLCST 340
+H LV LS L ++
Sbjct: 163 LHSHRLVRLSSRLLTS 178
>12_01_0150 +
1155658-1156087,1156319-1156383,1156506-1156569,
1156988-1157115
Length = 228
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -1
Query: 259 HPVGLPRASSSLRSLIEDWASLT*ASVGLNAPT--RPDECQRLPAP 128
H + LP SS +S + A++ S+ ++PT RP C LP P
Sbjct: 33 HCISLPLLSSEHKSQTQMEAAVATPSLLFSSPTPRRPSSCLSLPPP 78
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 27.5 bits (58), Expect = 8.9
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +3
Query: 360 LVTPKKCHELFPMLNVEDVL--GGLWIPGD--GVGDP-HLLCMSLMR--EATDKGVGVME 518
L T + C EL LN++ ++ GG + D + P HLL + R + T KG+ V++
Sbjct: 229 LQTSQVCKELGKYLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLK 288
Query: 519 DCSVTAVLSKDDKVSGVE 572
DCS+ V+ + DK+ E
Sbjct: 289 DCSM-LVMDEADKLLAPE 305
>07_03_1544 -
27585581-27585757,27585986-27586091,27586246-27586338,
27587840-27587958,27588486-27588746,27589226-27589515,
27589624-27590152
Length = 524
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 505 TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 398
+P S ASL D + SP+PS G H P+ ++ S
Sbjct: 45 SPSSWASLAEDRGAPAPSPSPSGGRHAAPAAAAVGS 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,805,550
Number of Sequences: 37544
Number of extensions: 374913
Number of successful extensions: 1154
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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