Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0244
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 1e-24
SB_6288| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72) 32 0.42
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 30 1.3
SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99) 30 1.7
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_24975| Best HMM Match : ET (HMM E-Value=1) 29 3.0
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 29 3.0
SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088) 29 3.9
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 28 5.2
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086) 28 5.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 5.2
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 27 9.1
SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055) 27 9.1
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 27 9.1
>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 110 bits (264), Expect = 1e-24
Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 6/169 (3%)
Frame = +3
Query: 123 RVGAGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRD 299
++ +G+ WHS+GL+ +P+ +V + + L K LE G GW + G L +A ++
Sbjct: 142 KLTSGTTWHSAGLLWRLRPSDQEVEIIGHTRDLAKSLEEETGVSPGWIENGGLFIANNKE 201
Query: 300 RMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 479
R+ Y+R+ + + ID ++ PK EL+P++NV+D+ G L+ PGDG DP +L
Sbjct: 202 RLDEYKRLMTLGHCYGIDSHVLDPKATKELYPLMNVKDLYGTLYSPGDGTIDPAGWASAL 261
Query: 480 MREATDKGVGVMEDCSVTAVLSKDD-----KVSGVETTNGAIECDYFIN 611
R AT +G V E+C VT + ++ D +VSG++T G I+ +N
Sbjct: 262 TRGATKRGAKVFENCPVTGITTEVDDFGVLRVSGIDTVAGHIKTKNVVN 310
>SB_6288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 480 MREATDKGVGVMEDCSVTAVLSKDDKVSGVETTNGAIECDYFIN 611
MR++ + GV + E + +V + V GV+T G I+CD FIN
Sbjct: 71 MRKSRE-GVRIYEKVQLQSVTTDGQYVDGVKTDKGDIKCDIFIN 113
>SB_17506| Best HMM Match : DUF755 (HMM E-Value=0.72)
Length = 256
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 183 LAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRMTVYRRMKSQSVSWSIDC 356
L V+ AQS +R K + + G ++C +L A R R R+ K + VS IDC
Sbjct: 183 LLWVKAAQSELRSAKHYKDLVKDLGVQECDGVLSASKRKRKR-KRKRKRKKVSKEIDC 239
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 559 TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPT 446
TLSS S+ +E SS PTP + L+ + QS +P+
Sbjct: 211 TLSSSSSSGESEASSPVPTPKGLFDLLHEEQSSAEAPS 248
>SB_56415| Best HMM Match : Extensin_2 (HMM E-Value=0.99)
Length = 412
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHR 425
S +++ FVV TLS F + S ++ PL+V L+ +Q C PG ++
Sbjct: 337 SSTLSRFVVVYTSTLSRFVVVYTSTLSRLSGIPLAVHELVMAVQIGCDEGREVPGQYK 394
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 583 PFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 404
P STP TLS + ++ S TP + ++L I S +P PST ST
Sbjct: 204 PSTPSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPST 263
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 583 PFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSST 404
P STP TLS + ++ S TP + ++L I S +P PST ST
Sbjct: 754 PSTPSTPSTLSMPSTPSMPNTPSTPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPST 813
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 583 PFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPS-PGIHRPPSTSS 407
P STP T S+ ST T + TP+ S S + TPS PG PST S
Sbjct: 461 PSTPSTPSTPST-PSTPSTPSTPSTPSTPSTPSTSSTPSTPSTPSTPSAPGTPGTPSTPS 519
Query: 406 T 404
T
Sbjct: 520 T 520
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 586 APFVVSTPDTLSSFDSTAVTEQSSITP-TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
AP STP T S+ ST T + TP TP + ++ I S +PG PST
Sbjct: 128 APSTPSTPSTPST-PSTPSTPSTPSTPSTPSTPSTPITPGTPSTPSTPSAPGTPITPSTL 186
Query: 409 ST 404
ST
Sbjct: 187 ST 188
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 544 DSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS 383
D E++ TP P + S + G TP+PG PPS +T S G +
Sbjct: 228 DKGGAKEEAKTTPAPEN--SSTKPGAESGGETTPAPGATTPPSEETTPSAGGTT 279
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/61 (27%), Positives = 33/61 (54%)
Frame = -1
Query: 592 SIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPST 413
SI+P + T T S++++ AV +I+P+P S + + +PT SP ++ S+
Sbjct: 503 SISPSLNET--TSSAYETIAVNATPTISPSPNGTTSSLYETIDVNATPTISPSLNETTSS 560
Query: 412 S 410
+
Sbjct: 561 A 561
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = -1
Query: 595 HSIAPFVVSTPDTLSS--FDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 422
H I V+S T SS +++ AV ++I+P+P S + + + +PT SP P
Sbjct: 369 HKIGQPVLSVNATTSSSTYETVAVNTTTTISPSPNGTISSVYETLAVNATPTISPS---P 425
Query: 421 PSTSST 404
T+S+
Sbjct: 426 NGTTSS 431
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -1
Query: 562 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
D S++++ AV +I+P+P S + + +PT SP ++ S++
Sbjct: 580 DNYSAYETIAVNATPTISPSPNGTTSSLYETIDVNATPTISPSLNETTSSA 630
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = -1
Query: 592 SIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPST 413
+I+P + T T S++++ AV +I+P+P S + + +PT SP H +T
Sbjct: 618 TISPSLNET--TSSAYETIAVNATPTISPSPNGTTSSVYETIDLNATPTISPSPH--GTT 673
Query: 412 SSTF 401
SS +
Sbjct: 674 SSVY 677
>SB_24975| Best HMM Match : ET (HMM E-Value=1)
Length = 316
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITP-TPLSVASLIRDIQSKCGSPTPSPGIHRP 422
S S+ V TP+T S S +VT S+TP TPLS+++ S S + +P +
Sbjct: 96 SASVTASVSVTPNTPLS-PSASVTASVSVTPNTPLSLSA------SVTASVSVTPNTPQS 148
Query: 421 PSTSSTFSI 395
PS S T S+
Sbjct: 149 PSASVTASV 157
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -1
Query: 583 PFVVSTPD--TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
P + +P+ T S +++ AV SSI+P+P S + + + +PT SP P T+
Sbjct: 407 PSISPSPNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETIAVNATPTISPS---PNGTT 463
Query: 409 ST 404
S+
Sbjct: 464 SS 465
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -1
Query: 583 PFVVSTPD--TLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
P + +P+ T S +++ AV SSI+P+P S + + + +P+ SP P T+
Sbjct: 453 PTISPSPNGTTSSVYETIAVNSTSSISPSPNGTTSSVYETIAVNSTPSISPS---PNGTT 509
Query: 409 ST 404
S+
Sbjct: 510 SS 511
>SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 595 HSIAPFV--VSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSK 461
H A FV TP+ +S+FD +E+ +TP P SL D Q K
Sbjct: 110 HCSATFVSFTETPEDVSNFDEEFTSEEPILTP-PKEARSLNPDEQKK 155
>SB_34586| Best HMM Match : Drf_FH1 (HMM E-Value=0.088)
Length = 665
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -1
Query: 592 SIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPST 413
++AP S P+T ++ D+T V++ + T ++ S + + T +P PP T
Sbjct: 359 TVAPENTSAPETTAAPDTTLVSDTTLAPETTVAPESTVAPETTVAPETTVAPETTMPPET 418
Query: 412 S 410
+
Sbjct: 419 T 419
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 565 PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 407
P+T ++ D+T V E + T L+ + I + T +P I P TS+
Sbjct: 500 PETTAASDTTVVPETTDAPATTLAPKTTIAPETTVAQETTDAPAITMAPETSA 552
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 565 PDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRP 422
PDT+ T V+E +S T P D SP+P+ G +P
Sbjct: 783 PDTIEKQGITPVSESASSTSQPQKNQKSYSDPSQAQSSPSPAQGTAQP 830
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 586 APFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 407
AP + PDT ++ D+TAV E ++ T + + + T P P T+S
Sbjct: 906 APETTAAPDTTAAPDTTAVPETTAAPETTATPDTTAATETTAAPETTAVPETTAAPETTS 965
Query: 406 T 404
T
Sbjct: 966 T 966
>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
Length = 407
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 516 PSHPHLYQLLLS*ETYRANAGLL--HHHLESTGLQAHLQHSALEIIHDISLV*LSHNLCS 343
P+H + Q + ++Y ++ ++ HH L S + H S + H S + +SH+ +
Sbjct: 294 PAHYRVIQYISYYQSYHRSSSVINSHHQLTSVNIIQHQSTSVIIAYHQSSSLIISHHQST 353
Query: 342 TI 337
++
Sbjct: 354 SV 355
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -1
Query: 592 SIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPST 413
++AP S P+T ++ D+T V + + T ++ S + + T +P PP T
Sbjct: 2172 TVAPESTSAPETTAAPDTTLVPDTTLAPETTVAPESTVAPETTVAPETTVAPETTMPPET 2231
Query: 412 S 410
+
Sbjct: 2232 T 2232
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 562 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 401
++++S V S+TP P S + ++ K SP P H+PP + F
Sbjct: 689 ESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKP----HQPPPRPAPF 738
>SB_47035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 589 IAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSP-TPSPGIHRPPST 413
+ PF S+ + ++ F ++ + TP+ + S + +K SP TPS P T
Sbjct: 235 MTPFTPSSAEIMTPFTPSSAKIMTPFTPSSAKIMSPLTTSSAKIMSPLTPSSAKIMSPLT 294
Query: 412 SSTFSI 395
S+ I
Sbjct: 295 PSSAKI 300
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 589 IAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSP--TPSPGIHRPPS 416
+ PF S+ +S +++ S +TP+ + S + +K SP T S I P +
Sbjct: 257 MTPFTPSSAKIMSPLTTSSAKIMSPLTPSSAKIMSPLTPSSAKIMSPLTTSSAKIMSPLT 316
Query: 415 TSS 407
TSS
Sbjct: 317 TSS 319
>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
Length = 882
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIH 428
+ + ++ S+ T T ITP S A+L D S GSP PSP IH
Sbjct: 628 ITALSESGSADQDTEGTGGVPITPQGDSGANLTTDTSSTGGSPWPSP-IH 676
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 562 DTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 401
++++S V S+TP P S + ++ K SP P H+PP + F
Sbjct: 468 ESVASCSEDQVYSVPSLTPRPRSSSDTYEPVEPKAYSPKP----HQPPPRPAPF 517
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,141,051
Number of Sequences: 59808
Number of extensions: 421600
Number of successful extensions: 1213
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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