Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0244
         (613 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    25   1.9  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             24   4.4  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    24   4.4  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    24   4.4  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    24   4.4  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   5.9  

>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 466  SKCGSPTPSPGIHRPPSTSSTFSIGNNS 383
            S  G PTPS   H P  +S++ SIG  S
Sbjct: 1347 SSHGGPTPSIISHTPSLSSASGSIGPKS 1374


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 202 PSPQLGFLRSLRLVVGPQGGNNVVH 276
           P+P L FLR  ++V   + G  +VH
Sbjct: 847 PAPFLQFLRRTKVVTPSESGPIIVH 871


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 565 PDTLSSFDSTAVTEQSSITPTPLSVAS 485
           P     F   A+T++S + PTP +  S
Sbjct: 503 PTVAEEFTRLAITKRSGLDPTPATCCS 529


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 565 PDTLSSFDSTAVTEQSSITPTPLSVAS 485
           P     F   A+T++S + PTP +  S
Sbjct: 479 PTVAEEFTRLAITKRSGLDPTPATCCS 505


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 565 PDTLSSFDSTAVTEQSSITPTPLSVAS 485
           P     F   A+T++S + PTP +  S
Sbjct: 476 PTVAEEFTRLAITKRSGLDPTPATCCS 502


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 595 HSIA--PFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPG 434
           HSI   P  VS  D +SS  +   +    ITP P  V S    ++ +     P+PG
Sbjct: 156 HSIPSPPITVSGSD-MSSPGAPTGSSSPQITPRPTPVKSPYEWMKKQSYQSQPNPG 210


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,989
Number of Sequences: 2352
Number of extensions: 14507
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)