Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0244
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical ... 56 2e-08
AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical... 49 2e-06
AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical... 49 2e-06
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 33 0.12
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.65
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 31 0.86
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 31 0.86
AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical ... 30 1.1
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 29 2.0
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.0
U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical pr... 29 2.0
AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-li... 29 2.0
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 2.0
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 29 2.6
Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.5
U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 3.5
AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormo... 29 3.5
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 29 3.5
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 3.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 4.6
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 6.0
>AL032631-7|CAB63337.2| 855|Caenorhabditis elegans Hypothetical
protein Y106G6H.5 protein.
Length = 855
Score = 56.4 bits (130), Expect = 2e-08
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 4/164 (2%)
Frame = +3
Query: 132 AGSRWHSSGLVGA--FKPTLAQVRLAQSSIRLLKELEARGRPTGWKQCGSLLLARTRDRM 305
+G+ S+GLV + F + +AQ+S+ L L + + +CG LA +
Sbjct: 58 SGATGLSAGLVSSPIFWQDTSLQAIAQASLDLYSHLATTCK-FRYIKCGRTYLASSMANE 116
Query: 306 TVYRRMKSQSVSWSIDCDLVT-PKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSLM 482
+ RRM S+ V + +L+ + E +P L EDV L+ P D DP LC L
Sbjct: 117 ILLRRMYSRGVVHNDKVELLDCQSEMLERWPFLQTEDVQLALFSPEDVALDPVALCQHLA 176
Query: 483 REATDKGVGVMEDCSVTAVLSKDDK-VSGVETTNGAIECDYFIN 611
A D G + E V V D+K V GV T G IE +F++
Sbjct: 177 LIAKDYGALIYESNPVLEVHIGDEKQVYGVSTKMGFIETSHFVD 220
>AC087079-18|AAK27867.2| 830|Caenorhabditis elegans Hypothetical
protein Y37E3.17a protein.
Length = 830
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +3
Query: 132 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 308
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 67 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 126
Query: 309 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 479
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 127 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 186
Query: 480 MREATDKGVGVME 518
+ A + G V++
Sbjct: 187 VVGAKNGGAQVID 199
>AC087079-17|AAT81177.1| 837|Caenorhabditis elegans Hypothetical
protein Y37E3.17b protein.
Length = 837
Score = 49.2 bits (112), Expect = 2e-06
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Frame = +3
Query: 132 AGSRWHSSGLVGAFKPTLAQVRLAQSSIRLLKELEAR-GRPTGWKQCGSLLLARTRDRMT 308
+G+ +HS GLV A P + SI L +LEA G ++ G++ LA R+
Sbjct: 74 SGTSFHSPGLVSASHPAHRYKPILAHSIELYSKLEAETGVNIDFQPTGTIRLATNETRLA 133
Query: 309 VYRRMKSQSVSWSID-CD--LVTPKKCHELFPMLNVEDVLGGLWIPGDGVGDPHLLCMSL 479
+R+ ++ D C L+TP + EL P ++ +LG L DG L +L
Sbjct: 134 EFRKYVNRDYYKEGDVCKTTLLTPDQVRELAPDVDHSKILGALHTTNDGTISARALTQAL 193
Query: 480 MREATDKGVGVME 518
+ A + G V++
Sbjct: 194 VVGAKNGGAQVID 206
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGS-PTPSPGIHRPPSTSST 404
VV+ P T+ + STAVT+ S++ P +V ++ + +K + T SP + P+T T
Sbjct: 314 VVTVPSTVVTVPSTAVTKPSTVVTAPSTVVTVPSTVVTKPNTVVTSSPTVATTPTTVVT 372
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 454 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 365
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 52 APMPSQKILPPPTTSAPSNSGNNSINYMGV 81
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 454 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 365
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 113 APMPSQKILPPPTTSAPSNSGNNSINYMGV 142
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.1 bits (67), Expect = 0.65
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 454 SPTPSPGIHRPPSTSSTFSIGNNS*HFFGV 365
+P PS I PP+TS+ + GNNS ++ GV
Sbjct: 77 APMPSQKILPPPTTSAPSNSGNNSINYMGV 106
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -1
Query: 583 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 409 STFS 398
S+FS
Sbjct: 610 SSFS 613
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 30.7 bits (66), Expect = 0.86
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -1
Query: 583 PFVVSTPDTLSSFDS--TAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
P + P T FD T + E+ + + +P AS RD+ +PTP+ I+RP S+
Sbjct: 554 PDELGLPTTSIQFDDRLTVIVEEDTPSDSPAPDASP-RDLPE---TPTPTSPIYRPLSSL 609
Query: 409 STFS 398
S+FS
Sbjct: 610 SSFS 613
>AL110498-6|CAL69744.1| 109|Caenorhabditis elegans Hypothetical
protein Y64G10A.11 protein.
Length = 109
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 449 RRPAFALYVSYERSN**RCGCDGRLFCDSCAIERRQSVWSGNYKWCNR 592
+ P Y Y RS + GC+G+ SCA+ + ++++ YK NR
Sbjct: 19 KEPCVQAYTKYVRSR--KPGCNGKF--QSCAVRQPKTIYFHTYKKVNR 62
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -1
Query: 568 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGN 389
TP + DS + S+ P+ ++ I K TPSP + + PS+SS+ S +
Sbjct: 333 TPKRPQTNDSVSTRRSSTTWEVPIRPTTMNSQISRK---RTPSPVVRKAPSSSSSNSTSS 389
Query: 388 NS 383
+S
Sbjct: 390 SS 391
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -1
Query: 559 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 392
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 391 NNS*HF-FGVTKSQSMLHDT 335
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 573 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 632
Query: 418 STSST 404
+S +
Sbjct: 633 GSSQS 637
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -1
Query: 559 TLSSFDSTAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIG 392
T ++ STAVT SS+ +P P S+++ I S S +PS P S+ +I
Sbjct: 221 TAATSPSTAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQ 280
Query: 391 NNS*HF-FGVTKSQSMLHDT 335
++S F V S S + T
Sbjct: 281 SSSGTFPSSVASSPSTVGST 300
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 573 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 632
Query: 418 STSST 404
+S +
Sbjct: 633 GSSQS 637
>U28941-5|AAM98026.2| 989|Caenorhabditis elegans Hypothetical
protein F31D5.4 protein.
Length = 989
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 407
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 338
Query: 406 TF---SIGNNS*HFFGVTKSQSMLHDT 335
T ++ N S G+ ++L++T
Sbjct: 339 TVLAPTLKNLSDSGVGINNVSTVLNET 365
>AY314775-1|AAQ84882.1| 971|Caenorhabditis elegans methuselah-like
protein MTH-2 protein.
Length = 971
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITP---TPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSS 407
V + P T ++ ST+ ++ TP T + + + S SPT SP P+T++
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATSSTTSPTTSPTPEPEPTTTA 320
Query: 406 TF---SIGNNS*HFFGVTKSQSMLHDT 335
T ++ N S G+ ++L++T
Sbjct: 321 TVLAPTLKNLSDSGVGINNVSTVLNET 347
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSIT-PTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 401
V P + + A EQ+ + P P VA+ D++ CGS P+P P +T S +
Sbjct: 230 VTPAPAAAAPAPADAPVEQAPVAVPAPAPVAA--PDVE--CGSAAPAPAAAAPAATDSGY 285
Query: 400 SIGNNS 383
NS
Sbjct: 286 RSKRNS 291
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 568 TPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTF 401
TP T S+ + ++ E+ PT + AS + + PTPS I +PP T++ F
Sbjct: 16 TPTTSSNIELHSINEE----PTTVHPASS-ENSEDVPADPTPSSSISQPPPTTTLF 66
>Z77667-3|CAB01237.1| 527|Caenorhabditis elegans Hypothetical
protein M04B2.4 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +3
Query: 270 GSLLLARTRDRMTVYRRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDV-LGGLWIPGDG 446
G L LA+T + + + R + L++ + + +P +NV+DV L L + +G
Sbjct: 187 GYLRLAKTDEEVEMMRSAWKVQIERGAKVQLLSKDELTKRYPYMNVDDVLLASLGVENEG 246
Query: 447 VGDPHLLCMSLMRE 488
D L +S +RE
Sbjct: 247 TIDTWQL-LSAIRE 259
>U58757-9|AAM75377.1| 503|Caenorhabditis elegans Hypothetical
protein C01B10.6b protein.
Length = 503
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S ++ P V +P +S + A ++ + T + + S + D S GS P P P
Sbjct: 22 SSTVIPSTVPSPTGDTSQVTGASSDSTGSTGSSAAPGSTVTD-GSNTGSTAPVPSTTPTP 80
Query: 418 STSSTFSIGNN 386
STF + N+
Sbjct: 81 MKFSTFPVSND 91
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 315 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 419
++MKS + S SID L +P C P+ N EDV+
Sbjct: 127 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 159
>AC006671-3|AAR30203.1| 235|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform c protein.
Length = 235
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 315 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 419
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 315 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 419
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 315 RRMKSQSVSWSIDCDLVTPKKCHELFPMLNVEDVL 419
++MKS + S SID L +P C P+ N EDV+
Sbjct: 122 KKMKSDTNSGSIDASLPSPNGCDS--PVSNNEDVI 154
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 418 STSSTFSIGNNS*HFFGVTKSQSMLHDT 335
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.3 bits (60), Expect = 4.6
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S S +P T T + ST SS TP+ + +S+ S S +
Sbjct: 480 STSTSPSSTVTTSTTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTK 539
Query: 418 STSSTFSIGNNS*HFFGVTKSQSMLHDT 335
S ++T S G N F+ V K+ + +D+
Sbjct: 540 SETTTSSDGTNP-DFYFVEKATTTFYDS 566
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -1
Query: 541 STAVTEQSSI----TPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFSIGNNS*HF 374
STAVT SS+ +P P S+++ I S S +PS P S+ +I ++S F
Sbjct: 20 STAVTSPSSLGTSSSPLPSSISTSALPIASSSASSSPSAASSTTPVVLSSSTIQSSSGTF 79
Query: 373 -FGVTKSQSMLHDT 335
V S S + T
Sbjct: 80 PSSVASSPSTVGST 93
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 598 SHSIAPFVVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPP 419
S S +TP + S+ S++ + SS +P P + ++ S+ SP+ +P P
Sbjct: 366 SQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSSTPT 425
Query: 418 STSST 404
+S +
Sbjct: 426 GSSQS 430
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/56 (23%), Positives = 27/56 (48%)
Frame = -1
Query: 577 VVSTPDTLSSFDSTAVTEQSSITPTPLSVASLIRDIQSKCGSPTPSPGIHRPPSTS 410
++S P SS + + Q+ P+P + + + ++ +P P+P H S+S
Sbjct: 472 ILSAPTPASSDYDSMTSSQNRRNPSPATAIDDLLGLGTETSAPAPAPSTHFNNSSS 527
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,369
Number of Sequences: 27780
Number of extensions: 314601
Number of successful extensions: 1023
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -