Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0244
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.77 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 447 HHHLESTGLQAH 412
           HHHL+ST +Q H
Sbjct: 148 HHHLQSTAVQDH 159


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 496 SVASLIRDIQSKCGSPTPSPGIHRPPSTSSTFS 398
           S A +   +     SP+P+P I   PS+S++ S
Sbjct: 496 STAVIHEPVVETNSSPSPNPRIASAPSSSTSSS 528


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 469 QSKCGSPTPSPGIHRPPSTSSTFSIGNNS 383
           Q   G+P P P  H+ P      S  N S
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPS 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,221
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)