Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0242
(543 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 72 1e-11
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 72 1e-11
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti... 66 7e-10
UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole... 59 6e-08
UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum dem... 43 0.005
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 38 0.11
UniRef50_Q4Z066 Cluster: Putative uncharacterized protein; n=1; ... 37 0.26
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 36 0.60
UniRef50_Q6ZRM1 Cluster: CDNA FLJ46255 fis, clone TESTI4023172; ... 36 0.60
UniRef50_A7S7P6 Cluster: Predicted protein; n=1; Nematostella ve... 35 1.1
UniRef50_Q7NBW8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.4
UniRef50_O96121 Cluster: Putative uncharacterized protein PFB008... 34 1.8
UniRef50_UPI00004DBC97 Cluster: UPI00004DBC97 related cluster; n... 34 2.4
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu... 33 3.2
UniRef50_UPI0000ECB802 Cluster: UPI0000ECB802 related cluster; n... 33 4.3
UniRef50_Q7R8T3 Cluster: Streptococcus pyogenes AMV156; n=6; Pla... 33 5.6
UniRef50_A5E0Q3 Cluster: Putative uncharacterized protein; n=2; ... 33 5.6
UniRef50_UPI000069E6CB Cluster: UPI000069E6CB related cluster; n... 32 7.4
UniRef50_Q8IBB3 Cluster: Leucine-tRNA ligase; n=3; cellular orga... 32 7.4
UniRef50_UPI0000D8F084 Cluster: UPI0000D8F084 related cluster; n... 32 9.8
UniRef50_Q5QZE5 Cluster: Uncharacterized conserved membrane prot... 32 9.8
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 71.7 bits (168), Expect = 1e-11
Identities = 32/56 (57%), Positives = 38/56 (67%)
Frame = +2
Query: 320 HERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMR 487
H +H AEMRMLRWMCG TR DKI+NE R VA V++KL+ RL W G+V R
Sbjct: 575 HVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKR 630
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 71.7 bits (168), Expect = 1e-11
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMR 487
+HE V AEMRMLRWMCG TR DKI+NE R VAP++ K+ RL W G+V R
Sbjct: 258 QHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHVER 314
>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF- hand; n=1; Medicago
truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic)
Length = 559
Score = 65.7 bits (153), Expect = 7e-10
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMR 487
+HE V AEMRMLRWM G TR D+I+N+ R VAP++ KL RL W G+V R
Sbjct: 300 QHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVENRLRWFGHVER 356
>UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF5629,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 73
Score = 59.3 bits (137), Expect = 6e-08
Identities = 28/59 (47%), Positives = 39/59 (66%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E + AEM+MLR+ GVTRMD+IK EY RG+A V +K++ RL W G+V R +
Sbjct: 13 RQETELEVAEMKMLRFSLGVTRMDEIKKEYIRGTAHVRCFGDKVRETRLRWFGHVQRTD 71
>UniRef50_Q6L3J9 Cluster: Polyprotein, putative; n=1; Solanum
demissum|Rep: Polyprotein, putative - Solanum demissum
(Wild potato)
Length = 139
Score = 42.7 bits (96), Expect = 0.005
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 341 AEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRL 463
AEMRM RWMC TR DKI N+ + V++K++ RL
Sbjct: 98 AEMRMFRWMCRQTRKDKIGNKDIWSKVGITVVVDKMREARL 138
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 38.3 bits (85), Expect = 0.11
Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 344 EMRMLRWMCGVTRMDKIKNEYSRGSAKV-APVINKLKSGRLAWCGYVMR 487
EM LR + GVTR+DKI+N + + S + V++K+ + R+ + G+V+R
Sbjct: 907 EMACLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRIKYFGHVLR 955
>UniRef50_Q4Z066 Cluster: Putative uncharacterized protein; n=1;
Plasmodium berghei|Rep: Putative uncharacterized protein
- Plasmodium berghei
Length = 185
Score = 37.1 bits (82), Expect = 0.26
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = -3
Query: 325 FMLYLLLTELIIVPKNNIYLIEISKTGSYYRIEIEIF*CAIP*IGSLSFVTYTYVSCVRF 146
F Y+ ++ I NN+ I +Y + + F CAIP S + V ++F
Sbjct: 62 FNKYINDVDIYIYYNNNLNFIHDRIFETYIFLFLNKFICAIPFFDSKDINKWKIV-ILKF 120
Query: 145 LKKHYNQISLRRFNLNIHSDKIHYQ--LHVFFFFF 47
LK ++ ISL N I D I Y L+ F+FF+
Sbjct: 121 LKNLFHNISLSYHNNYIIQDYIFYSFLLNSFYFFY 155
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 35.9 bits (79), Expect = 0.60
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 344 EMRMLRWMCGVTRMDKIKNEYSRGSAKV-APVINKLKSGRLAWCGYVMR 487
EMR LR + GV MDKI+NE R + + + ++ L W G+V+R
Sbjct: 407 EMRCLRTILGVHLMDKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVLR 455
>UniRef50_Q6ZRM1 Cluster: CDNA FLJ46255 fis, clone TESTI4023172;
n=1; Homo sapiens|Rep: CDNA FLJ46255 fis, clone
TESTI4023172 - Homo sapiens (Human)
Length = 377
Score = 35.9 bits (79), Expect = 0.60
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -2
Query: 536 HYHIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHTSIS 357
H H+HT P+H +P SH HT L + + C + + + H+L C H
Sbjct: 204 HTHVHT-PAH---TPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAH 259
Query: 356 TFASLPHALLFH 321
T PH L H
Sbjct: 260 THMLTPHHSLTH 271
>UniRef50_A7S7P6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 211
Score = 35.1 bits (77), Expect = 1.1
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -2
Query: 542 TLHYHI-HTSPSHMHLSPLYASHI-HTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLH 369
TL+ H HT +H HLS + +H HT T LI + LS+ L YT + P H
Sbjct: 28 TLYTHTSHTPCTHTHLSYTFHTHTSHTPCTHAPLIHLVHTYLSYTL-YTRTSHTPCTHTH 86
Query: 368 TSISTFASLPHALLFHALLI 309
+ + + H HA L+
Sbjct: 87 LTYTLYTRTSHTPCTHAPLV 106
>UniRef50_Q7NBW8 Cluster: Putative uncharacterized protein; n=1;
Mycoplasma gallisepticum|Rep: Putative uncharacterized
protein - Mycoplasma gallisepticum
Length = 177
Score = 34.7 bits (76), Expect = 1.4
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -3
Query: 436 YRGYFRTSSAILILYLVHSCHSTHPSQHSHLCRMHSSFMLYLLLTELIIVPKNNIYLIEI 257
Y+GYF A + +S + Q HL ++H + +L L+IVPK Y+I I
Sbjct: 64 YKGYFFDFDAKQSSKINYSLKNIKQHQLDHLRKIHEQGGIAFIL--LLIVPKEEFYMIPI 121
Query: 256 SKTGSYYR 233
K S+ +
Sbjct: 122 KKIDSWLK 129
>UniRef50_O96121 Cluster: Putative uncharacterized protein PFB0080c;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFB0080c - Plasmodium falciparum
(isolate 3D7)
Length = 485
Score = 34.3 bits (75), Expect = 1.8
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -2
Query: 137 ALQPNFTTKIQFKYTFRQNTLSITRVLFFFFVYHKSNISQTSSLF 3
A + N +T IQFK TF++N S L FF ++K N + S F
Sbjct: 72 AFEGNLSTNIQFKNTFKRNLSSKEPSLDDFFKFYKKNSYKLSESF 116
>UniRef50_UPI00004DBC97 Cluster: UPI00004DBC97 related cluster; n=1;
Xenopus tropicalis|Rep: UPI00004DBC97 UniRef100 entry -
Xenopus tropicalis
Length = 173
Score = 33.9 bits (74), Expect = 2.4
Identities = 24/78 (30%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Frame = -2
Query: 536 HYHIHTSP-SHMHLSPLYASHIHTTLTVRSLIC*LPGL------LSHFLCYTHSLSCPFL 378
H HIH +H+H L H+H IC L L +H L H +CP
Sbjct: 39 HLHIHACKHTHVHSHTLAHLHLHAYTRAHLQICTLTHLHLRAYTFTHLLTLAHLQACPLT 98
Query: 377 SLHTSISTFASLPHALLF 324
HT T L H F
Sbjct: 99 HSHTYALTLVHL-HTYTF 115
>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
nubilalis|Rep: Reverse transcriptase - Ostrinia
nubilalis (European corn borer)
Length = 497
Score = 33.5 bits (73), Expect = 3.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMR 487
R + + M R M GV+ D+I+NE R +V + ++ + W G++ R
Sbjct: 378 RRLKVTQRAMERAMLGVSLRDRIRNEEIRRRTRVTDIARRIAKIKWQWAGHIAR 431
>UniRef50_UPI0000ECB802 Cluster: UPI0000ECB802 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECB802 UniRef100 entry -
Gallus gallus
Length = 392
Score = 33.1 bits (72), Expect = 4.3
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2
Query: 527 IHTSPSHMHLSPLYA-SHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHT 366
+H+ H L+ L+A +H T L V + C L +L+H H+L+C + LHT
Sbjct: 89 LHSVACHYMLARLHAVTHACTLLHVVTHACTLLHMLAHCCMPLHTLACHYTLLHT 143
>UniRef50_Q7R8T3 Cluster: Streptococcus pyogenes AMV156; n=6;
Plasmodium (Vinckeia)|Rep: Streptococcus pyogenes AMV156
- Plasmodium yoelii yoelii
Length = 1006
Score = 32.7 bits (71), Expect = 5.6
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 100 LN*IFVVKFGCSAFLKTSRSLHKYM*RMIMIQFMVLRIKIFRFRFCNRNLSCLF 261
LN IF + FGCS++LK SL + I + +L + I F + N+N+ +F
Sbjct: 511 LNFIFTIMFGCSSYLKEHYSLTEEEKNNIFFKDNILDLPI--FEYFNKNVIDIF 562
>UniRef50_A5E0Q3 Cluster: Putative uncharacterized protein; n=2;
Saccharomycetaceae|Rep: Putative uncharacterized protein
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 1005
Score = 32.7 bits (71), Expect = 5.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = -2
Query: 536 HYHIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHTSIS 357
H+H H H H+ PL +H H+ + ++ SH TH P + T+ S
Sbjct: 45 HHHHHLHHHHHHIHPLNHTHSHSQASPTGVVDATSMNCSHHCHQTHQSPTPVIIQPTATS 104
Query: 356 TF 351
F
Sbjct: 105 QF 106
>UniRef50_UPI000069E6CB Cluster: UPI000069E6CB related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069E6CB UniRef100 entry -
Xenopus tropicalis
Length = 160
Score = 32.3 bits (70), Expect = 7.4
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -2
Query: 530 HIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHF--LCYTHSLSCPFLSLHTSIS 357
H++T+ +H H+ Y +H+HT L L+HF L YTH+LS S HT
Sbjct: 81 HVYTN-THKHIFFYYYTHLHTLFFFLFL-----HTLAHFYTLIYTHTLSHNASSTHTHTH 134
Query: 356 TFASLPHALLFHAL 315
+ + LL +A+
Sbjct: 135 IYIYIYLHLLANAM 148
>UniRef50_Q8IBB3 Cluster: Leucine-tRNA ligase; n=3; cellular
organisms|Rep: Leucine-tRNA ligase - Plasmodium
falciparum (isolate 3D7)
Length = 1481
Score = 32.3 bits (70), Expect = 7.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 158 LREVFKKALQPNFTTKIQFKYTFRQNTLSITRVLFFFFVYHKSNISQ 18
++E+ K + N+ K F +++ QN L + FFF YH NI Q
Sbjct: 408 IKELNNKIQKYNYINKYDFFFSYHQNDLFLF-FSFFFNYYHNRNIDQ 453
>UniRef50_UPI0000D8F084 Cluster: UPI0000D8F084 related cluster; n=1;
Danio rerio|Rep: UPI0000D8F084 UniRef100 entry - Danio
rerio
Length = 185
Score = 31.9 bits (69), Expect = 9.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 477 YPHHANRPLFNLLITGATFALPLLYSFFIL 388
+PH PLF L I+G++F P YS+FIL
Sbjct: 151 FPHSV--PLFCLYISGSSFKSPSAYSYFIL 178
>UniRef50_Q5QZE5 Cluster: Uncharacterized conserved membrane
protein; n=1; Idiomarina loihiensis|Rep: Uncharacterized
conserved membrane protein - Idiomarina loihiensis
Length = 119
Score = 31.9 bits (69), Expect = 9.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 431 GLLSHFLCYTHSLSCPFLSLHTSISTFASLPHALLFHALLI 309
G+ LC+ H L+ P L + ++ AS+ LFH LL+
Sbjct: 6 GIFFSGLCFVHCLATPILLIFLGTNSLASVLETPLFHRLLL 46
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,277,144
Number of Sequences: 1657284
Number of extensions: 9674291
Number of successful extensions: 25286
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25249
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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