Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.4  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   5.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.5  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    25   9.5  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -3

Query: 355 HSH---LCRMHSSFMLYLLLTELIIVPKNNIYLIEISKTGSYYRIE 227
           HSH   LC   SSF+  LLL +      N IY+ EI+++ S  R+E
Sbjct: 631 HSHKFILCA-RSSFLRKLLLQKKKSSVSNIIYIEEITQSHSTIRVE 675


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 190  SLSFVTYTYVSCVRFLKKHYNQISLRRFNLNI 95
            S+SF  Y   + V+FLK  Y +  + + NL I
Sbjct: 1012 SISFPMYAIHASVKFLKLDYLRSLMNKLNLKI 1043


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 419 HFLCYTHSLSCPFLSLHTSISTFASLPHALLFHALLI 309
           HFL +     C FLS   S+S   SL  A+LF  LL+
Sbjct: 154 HFLFFFFLCVCVFLSFLFSLSHLLSL--AILFLPLLL 188


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 163 VSCVRFLKKHYNQISLRRFNLNIHSDKIHYQLHVFFFF 50
           ++C+  L  + ++I     + N+ SD +  Q+H  FFF
Sbjct: 293 LTCLYLLSCYESEILNLSSDTNLESDFLLRQIHAAFFF 330


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASHIHTT 465
           ++ +H  P H H S + AS IH T
Sbjct: 77  YWKLHPHPHHQHDSIIPASWIHDT 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,732
Number of Sequences: 5004
Number of extensions: 44412
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)