Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0015 + 13777383-13777621,13777887-13777972,13778094-137782...    31   0.59 
01_03_0182 + 13537522-13539699                                         29   2.4  
01_01_1026 - 8124929-8125120,8125294-8125344,8125610-8125743,812...    27   9.7  

>09_04_0015 +
           13777383-13777621,13777887-13777972,13778094-13778208,
           13778380-13778680
          Length = 246

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 392 IKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
           I ++Y  G  +  PV+N L+S   AW  ++M+ E
Sbjct: 116 ILSQYGLGPEEYGPVVNSLRSNPKAWLEFMMKFE 149


>01_03_0182 + 13537522-13539699
          Length = 725

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = -3

Query: 412 SAILILYLVHSCH-STHPSQHS--HLCRMHSSFMLYLLLTELIIVPKN 278
           +A+L++++V       +P  HS   +CR  S++M+YLL+    ++P N
Sbjct: 540 TALLMMHMVTEVFLRQYPGNHSLVDVCRKLSNYMIYLLVNHPSMLPLN 587


>01_01_1026 -
           8124929-8125120,8125294-8125344,8125610-8125743,
           8125842-8126096,8126175-8126513,8126607-8126748,
           8127068-8127199
          Length = 414

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -3

Query: 358 QHSHLCRMHSSFM-LYLLLTELIIV 287
           QHSH C+MH++ + LY+ +  ++ +
Sbjct: 41  QHSHDCKMHTTMVALYITICSILFI 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,365,328
Number of Sequences: 37544
Number of extensions: 244498
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)