Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0242
(543 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3) 37 0.012
SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3) 37 0.012
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.065
SB_52890| Best HMM Match : PH (HMM E-Value=1e-06) 34 0.086
SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 34 0.086
SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43) 34 0.086
SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83) 34 0.086
SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3) 34 0.086
SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 34 0.086
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07) 34 0.086
SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43) 34 0.086
SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 34 0.086
SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 34 0.086
SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3) 34 0.086
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3) 34 0.086
SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3) 34 0.086
SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3) 34 0.086
SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.086
SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 33 0.15
SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011) 33 0.20
SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 32 0.26
SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5) 32 0.35
SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 32 0.35
SB_24941| Best HMM Match : DPRP (HMM E-Value=1) 32 0.35
SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 32 0.35
SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 32 0.35
SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11) 32 0.35
SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 32 0.35
SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5) 32 0.35
SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13) 32 0.35
SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4) 32 0.35
SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 32 0.35
SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 32 0.35
SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_2170| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_39589| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_37146| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_36046| Best HMM Match : zf-C2H2 (HMM E-Value=0.42) 31 0.61
SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06) 31 0.80
SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032) 31 0.80
SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096) 30 1.4
SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34) 30 1.4
SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9) 30 1.4
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 30 1.4
SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6) 29 1.9
SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2) 29 1.9
SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012) 29 1.9
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36) 29 1.9
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 29 2.5
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35) 29 3.2
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 29 3.2
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5) 29 3.2
SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011) 28 4.3
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08) 28 4.3
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 28 5.7
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35) 27 7.5
SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07) 27 9.9
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30) 27 9.9
SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_3826| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ +H MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 124 RQEKRLHTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 182
>SB_44400| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 328
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ +H MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 124 RQEKRLHTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 182
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 35.5 bits (78), Expect = 0.028
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 350 RMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
R LR +CG+ + I NE + + ++N+++ RL W G+V+R ++
Sbjct: 10 RCLRRICGIFWPNVISNEELYKNTSSSSLVNQIRYRRLKWLGHVLRMDQ 58
>SB_27259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 34.3 bits (75), Expect = 0.065
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 350 RMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
R LR +CG+ + I N+ + + ++N+++ RL W G+V+R ++
Sbjct: 10 RCLRRICGIFWPNVISNQELYKNTSSSSLVNQIRYRRLKWLGHVLRMDQ 58
>SB_52890| Best HMM Match : PH (HMM E-Value=1e-06)
Length = 449
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 75 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 133
>SB_43044| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 226
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_41884| Best HMM Match : RVT_1 (HMM E-Value=1.69557e-43)
Length = 677
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 515 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 573
>SB_41028| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 798
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 593 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 651
>SB_35827| Best HMM Match : zf-C2H2 (HMM E-Value=0.83)
Length = 223
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_14018| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 238
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 124 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 182
>SB_12029| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 192
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 9 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 67
>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
Length = 754
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_53622| Best HMM Match : RVT_1 (HMM E-Value=7.90332e-43)
Length = 458
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 344 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 402
>SB_49894| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 226
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_45372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2973
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 2435 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 2493
>SB_42594| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 186
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 3 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 61
>SB_42164| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 290
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 176 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 234
>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 159 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 217
>SB_34465| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 280
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 124 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 182
>SB_30624| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 406
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_27308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 159 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 217
>SB_17490| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 348
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 176 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 234
>SB_2346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 33.9 bits (74), Expect = 0.086
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 43 RQEKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 101
>SB_33679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
K + G +E MLRWMC + D R + + L+ RL W G+V R +
Sbjct: 3 KLQLGSPRSERAMLRWMCALKPEDATSLSTIRDRLGIESLELALRKARLQWFGHVERAQ 61
>SB_6798| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 318
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 323 ERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
E+ ++ MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 137 EKRLNTFHMRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 193
>SB_22184| Best HMM Match : PHD (HMM E-Value=0.00011)
Length = 634
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 344 EMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMR 487
E M+RWMC + + I R + + L+ RL W G+V R
Sbjct: 521 ERAMIRWMCAIKPSNDISTSELRLRLNIEDLDAALRRRRLRWYGHVQR 568
>SB_25973| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 416
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKI-KNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR LR + G+ DK+ KNE S + + ++ RL W G+V R E
Sbjct: 233 RQEKRLNTFHMRCLRRILGIHWSDKVTKNEVLERSG-LPTLFTLIRQRRLRWLGHVCRME 291
>SB_41510| Best HMM Match : Minor_tail_Z (HMM E-Value=3.5)
Length = 208
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 98 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 157
>SB_40055| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 303
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 124 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 183
>SB_24941| Best HMM Match : DPRP (HMM E-Value=1)
Length = 354
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR LR + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 187 KNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 242
>SB_19821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 349 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 408
>SB_14108| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 404
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 225 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 284
>SB_9519| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 299
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 120 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 179
>SB_3604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1319
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 1140 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 1199
>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
Length = 959
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 844 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 903
>SB_47792| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 255
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR LR + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 136 KNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 191
>SB_46702| Best HMM Match : LETM1 (HMM E-Value=5.5)
Length = 306
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR LR + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 187 KNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 242
>SB_18732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-13)
Length = 1582
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR LR + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 1497 KNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 1552
>SB_13171| Best HMM Match : AT_hook (HMM E-Value=6.4)
Length = 188
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR LR + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 69 KNLHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 124
>SB_6922| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 425
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 355 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 414
>SB_5327| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 328
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+HE+ + +R LR + + D+I N A + VI ++ + W G+V R +
Sbjct: 149 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHVCRMSD 208
>SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 31.5 bits (68), Expect = 0.46
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 438 ITGATFALPLLYSFFILSILVTPHIHLNI 352
++G TF LL F + SI P+IH+NI
Sbjct: 158 VSGLTFGAALLCMFLVRSIYAIPYIHVNI 186
>SB_5933| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_2170| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_43612| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_39589| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_37146| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_36046| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
Length = 174
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +2
Query: 347 MRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
MR LR + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 1 MRCLRRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 49
>SB_34904| Best HMM Match : RVT_1 (HMM E-Value=1.1e-06)
Length = 530
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR L + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 347 RQEKRLNTFHMRCLCRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 405
>SB_4450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ E+ ++ MR L + G+ DK+ N + + + L+ RL W G+V R E
Sbjct: 227 RQEKRLNTFHMRCLCRILGIHWSDKVTNNEVLERSGLPTLFTLLRQRRLRWLGHVCRME 285
>SB_19159| Best HMM Match : RVT_1 (HMM E-Value=0.00032)
Length = 426
Score = 30.7 bits (66), Expect = 0.80
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 326 RGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+ +HA MR L+ + +T MDK+ N+ + + + L L W G+V R +
Sbjct: 307 KNLHAYMMRHLKEIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHVHRMD 362
>SB_54448| Best HMM Match : RVT_1 (HMM E-Value=0.096)
Length = 343
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYV 481
+HE+ + +R LR + + D+I N A + VI ++ + W G+V
Sbjct: 287 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHV 341
>SB_41718| Best HMM Match : RVT_1 (HMM E-Value=1.4e-34)
Length = 470
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYV 481
+HE+ + +R LR + + D+I N A + VI ++ + W G+V
Sbjct: 414 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHV 468
>SB_32337| Best HMM Match : CaMBD (HMM E-Value=5.9)
Length = 289
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYV 481
+HE+ + +R LR + + D+I N A + VI ++ + W G+V
Sbjct: 219 RHEKLLQQFHLRCLRNILNIRWQDRITNTEVLERANLPSVITTMRKAQTRWAGHV 273
>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N + A + K+ +L W G+V+R EE
Sbjct: 459 RHIKKLGQFHTRSLRAIMRIRWQDRITNLEVQDRADTTSIEAKILQAQLRWSGHVIRMEE 518
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -3
Query: 496 LLXTHHISTPR*PSAL*FVDYRGYFRTSSAILILYLVHSCHSTHPSQHSHL 344
++ HH P S++ + + + +SS+I+I+ ++H H HPS S +
Sbjct: 276 IIIIHHHHHPSSSSSIIIIHHHHHPSSSSSIIIIIIIH--HHHHPSSSSSI 324
>SB_56583| Best HMM Match : RNA_pol_Rpb7_N (HMM E-Value=5.6)
Length = 234
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 332 VHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYV 481
+HA MR LR + +T MDK+ N+ + + + L L W G+V
Sbjct: 147 LHAYMMRHLREIMKITWMDKVTNKEIYKRTGLRSMADTLIEKNLRWTGHV 196
>SB_4898| Best HMM Match : CaMBD (HMM E-Value=1.2)
Length = 259
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 175 RHIKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 234
>SB_50753| Best HMM Match : zf-C2H2 (HMM E-Value=0.012)
Length = 401
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 230 RHIKKLEQFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 289
>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3669
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 3224 RHIKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 3283
>SB_6541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 626 RHIKKLEQFHTRSLRAIMHIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 685
>SB_962| Best HMM Match : RVT_1 (HMM E-Value=2.5e-36)
Length = 1195
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +2
Query: 317 KHERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
+H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 994 RHIKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 1053
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 341 AEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXE 493
+E MLRWMC + D R + + L RL W G+V R +
Sbjct: 539 SERAMLRWMCALKPEDDPSLSPIRDRLGIESLELALWKARLRWFGHVERAQ 589
>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
Length = 963
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 320 HERGVHAAEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
H + + R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 789 HIKKLERFHTRSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWSGHVIRMEE 847
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 350 RMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
R LR +C + I N+ + V++++K R+ W G+V+R ++
Sbjct: 10 RCLRRICCIFWPAVISNQELYKKTRSHSVVDEIKCRRMRWLGHVLRMDQ 58
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 28.7 bits (61), Expect = 3.2
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = -2
Query: 536 HYHIHTSPSHMHLSPLYASHI--HTTLTVRSLIC*LPGLLSHFLCY-THSLSCPFLSLHT 366
H + HTS HL SHI + TLTV +P LLSH L Y T +++ P +S HT
Sbjct: 572 HTYRHTSSGISHLP----SHIRRYLTLTVTHHFTGIPHLLSHILRYLTLTVTHPPVS-HT 626
Query: 365 ---SISTFASLP-HALLFHALLITN 303
+ + LP H + L +TN
Sbjct: 627 YRHKSTGISHLPSHIRRYLTLTVTN 651
>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
Length = 325
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 536 HYHIHTSPSHMHLSPLYASHIH 471
HYH H P H H PL H H
Sbjct: 296 HYHHHHPPYHYHYPPLPYRHHH 317
>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
Length = 734
Score = 28.3 bits (60), Expect = 4.3
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -2
Query: 527 IHT-SPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHTSISTF 351
IHT SPSH LS + IHT +L+ L H + HSL +HT++
Sbjct: 245 IHTHSPSHT-LS-FTRTLIHTHSHSHALL--FTRTLIHTHSHPHSLLFTRTIIHTTLIHT 300
Query: 350 ASLPHALLFHALLI 309
S HALLF LI
Sbjct: 301 HSYSHALLFTRTLI 314
>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 536 HYHIHTSPSHMHLSPLYASHIHTT 465
H H H +H H +P + +H+H T
Sbjct: 400 HTHTHLHDTHTHETPRHDTHLHDT 423
>SB_19895| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 335
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 341 AEMRMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCG 475
+E MLRWMC + D R + + L+ RL W G
Sbjct: 278 SERAMLRWMCALKPEDDTSLSTIRDRLGIESLELALRKARLRWFG 322
>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.9 bits (59), Expect = 5.7
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -2
Query: 542 TLHYHIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYT-HSLS-CPFLSLH 369
++ YH S SH ++S HT ++V SL L G+ F C++ S+S F+ H
Sbjct: 255 SIRYHSLFSVSHTRFGVTHSSRCHTLVSV-SLT--LLGVTHSFRCHSLFSVSHTRFVITH 311
Query: 368 TS-ISTFASLPHAL-LFHALL 312
+S T S+ H L L H L+
Sbjct: 312 SSHCHTLVSVLHTLPLCHTLV 332
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -2
Query: 542 TLHYHIHTSPSHMHLSPLYASHIH----TTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLS 375
T HY +H S +H +++ +H H +T T I H++ + S + P+++
Sbjct: 52 THHYIVHASTTHPYITYASTTHPHIARASTPTTHPYIT-HASTTHHYIVHA-STTHPYIT 109
Query: 374 LHTSISTFASLPHA 333
++ +T +PHA
Sbjct: 110 YASTPTTHPHIPHA 123
>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
Length = 869
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 350 RMLRWMCGVTRMDKIKNEYSRGSAKVAPVINKLKSGRLAWCGYVMRXEE 496
R LR + + D+I N A + K+ +L W G+V+R EE
Sbjct: 744 RSLRAIMRIRWQDRITNLEVLDRADTTSIEAKILQAQLRWYGHVIRMEE 792
>SB_30318| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-07)
Length = 546
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = -3
Query: 187 LSFVTYTYVSCVRFLKKHYNQISLRRFNLNIHSDKIHYQLHVFFFFFSSITKVIFHRHRR 8
L V TY CV + K+HY Q+ R + + + H +S+T V R R
Sbjct: 180 LDIVLSTYRGCVYYPKEHYQQLDSTRKKMVYFNG--FCKRHNCTLSLTSLTPVKMLRQDR 237
Query: 7 C 5
C
Sbjct: 238 C 238
>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
Length = 634
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -3
Query: 376 HSTHPSQHSHLCRMHSSFMLYLLLTELIIVPKNNIYLIEI 257
H H H C H+ ++ +++ +IIV N I +I I
Sbjct: 93 HQQHHRHQQHPCYHHAIIIIIIIIIIIIIVISNIIIIIII 132
>SB_39746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 639
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 138 STTTKFHYEDSI*IYIPTKYTINYTCS 58
ST T F+ S+ IYI K+ ++Y C+
Sbjct: 103 STRTIFYVSSSLVIYIVVKFLMSYECN 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,504
Number of Sequences: 59808
Number of extensions: 317820
Number of successful extensions: 866
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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