Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).  pr...    36   0.092
AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens ...    33   0.65 

>AK128134-1|BAC87289.1|  377|Homo sapiens member 6 (SLC12A6).
           protein.
          Length = 377

 Score = 35.9 bits (79), Expect = 0.092
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHTSIS 357
           H H+HT P+H   +P   SH HT L + +  C      + +  + H+L C     H    
Sbjct: 204 HTHVHT-PAH---TPHTRSHNHTCLYLLTHACTNTPAYTSYTAHPHTLHCSPSHTHAPAH 259

Query: 356 TFASLPHALLFH 321
           T    PH  L H
Sbjct: 260 THMLTPHHSLTH 271


>AK123631-1|BAC85667.1|  207|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41637 fis, clone FEBRA1000030, weakly  similar
           to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
          Length = 207

 Score = 33.1 bits (72), Expect = 0.65
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 539 LHYHIHTSPSHMHLSPLYASHIHTTLTVRSLIC*LPGLLSHFLCYTHSLSCPFLSLHT 366
           +H H HT  +H H      +H HT   +   +  LP + +H   +TH+LSC  L  HT
Sbjct: 75  IHTHTHTH-THTHAVLYLPTHTHTHAVLT--LAYLP-IHTHTHTHTHTLSCTSLYTHT 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,722,981
Number of Sequences: 237096
Number of extensions: 1487437
Number of successful extensions: 2463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2458
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)