Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023721-1|AAY85121.1|  673|Drosophila melanogaster AT01259p pro...    29   4.1  
BT001274-1|AAN71030.1|  669|Drosophila melanogaster AT05655p pro...    29   4.1  
AE014297-353|AAF51954.1|  669|Drosophila melanogaster CG1193-PB,...    29   4.1  
AY058386-1|AAL13615.1|  453|Drosophila melanogaster GH14865p pro...    29   5.4  
AE014134-913|AAF52244.1|  453|Drosophila melanogaster CG14021-PB...    29   5.4  
AE014134-912|AAF52245.1|  453|Drosophila melanogaster CG14021-PA...    29   5.4  
AE014134-302|AAN10464.1|  394|Drosophila melanogaster CG31662-PA...    28   7.2  

>BT023721-1|AAY85121.1|  673|Drosophila melanogaster AT01259p
           protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 397 LYLVHSCHSTHPSQHSHLCRMHSSFML 317
           L+ +H C ST P+  SH+ RM  S +L
Sbjct: 99  LWDLHQCSSTPPTSLSHMARMMDSLIL 125


>BT001274-1|AAN71030.1|  669|Drosophila melanogaster AT05655p
           protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 397 LYLVHSCHSTHPSQHSHLCRMHSSFML 317
           L+ +H C ST P+  SH+ RM  S +L
Sbjct: 99  LWDLHQCSSTPPTSLSHMARMMDSLIL 125


>AE014297-353|AAF51954.1|  669|Drosophila melanogaster CG1193-PB,
           isoform B protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 397 LYLVHSCHSTHPSQHSHLCRMHSSFML 317
           L+ +H C ST P+  SH+ RM  S +L
Sbjct: 99  LWDLHQCSSTPPTSLSHMARMMDSLIL 125


>AY058386-1|AAL13615.1|  453|Drosophila melanogaster GH14865p
           protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASH 477
           H H HT P  +HL P +A+H
Sbjct: 33  HLHPHTHPRPVHLPPAHATH 52


>AE014134-913|AAF52244.1|  453|Drosophila melanogaster CG14021-PB,
           isoform B protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASH 477
           H H HT P  +HL P +A+H
Sbjct: 33  HLHPHTHPRPVHLPPAHATH 52


>AE014134-912|AAF52245.1|  453|Drosophila melanogaster CG14021-PA,
           isoform A protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASH 477
           H H HT P  +HL P +A+H
Sbjct: 33  HLHPHTHPRPVHLPPAHATH 52


>AE014134-302|AAN10464.1|  394|Drosophila melanogaster CG31662-PA
           protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/101 (24%), Positives = 46/101 (45%)
 Frame = -3

Query: 352 SHLCRMHSSFMLYLLLTELIIVPKNNIYLIEISKTGSYYRIEIEIF*CAIP*IGSLSFVT 173
           +HL     S  L  +L EL+++ KN+   + +S+  ++ R  IE     I  IGS S V 
Sbjct: 104 THLRTFSRSSELVEILNELLVLDKNHFSKLMLSECHTFNRYVIEKGLVIILEIGS-SLVL 162

Query: 172 YTYVSCVRFLKKHYNQISLRRFNLNIHSDKIHYQLHVFFFF 50
           Y  +   + +   Y  + +    L +    +H+ L V + +
Sbjct: 163 YFGIPNSKIVV--YEAVCIYIVQLEVLMVVMHFHLAVIYIY 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,468,599
Number of Sequences: 53049
Number of extensions: 470265
Number of successful extensions: 1510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)