Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    30   0.94 
AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine re...    30   1.2  
Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/66 (21%), Positives = 34/66 (51%)
 Frame = -3

Query: 445 FVDYRGYFRTSSAILILYLVHSCHSTHPSQHSHLCRMHSSFMLYLLLTELIIVPKNNIYL 266
           F D +  F     +L LYL+        S +  L  +++S+ LY +++ ++++ K ++  
Sbjct: 244 FADLQSIFMIIHMLLFLYLLEFGVGFEKSTYISLVELNASYPLYAVVSIVVLLKKAHLNK 303

Query: 265 IEISKT 248
           + + K+
Sbjct: 304 VRLKKS 309


>AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 11 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -3

Query: 445 FVDYRGYFRTSSAILILYLVHSCHSTHPSQHSHLCRMHSSFMLYLLLTELIIVPKNNIYL 266
           F + +  F      + LY++ +      S +  L  M SSF LY +++ LI+V K+ +  
Sbjct: 234 FANLQAGFMIIHMAMFLYILPAGAGMEKSTYISLVEMSSSFPLYAVVSILILVRKDRLNK 293

Query: 265 IEI 257
           +++
Sbjct: 294 VKL 296


>Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical
           protein W04G3.2 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 376 HSTHPSQHSHLCRMHSSFMLYLLLTELIIV 287
           HSTH  QH H    H S ML + +  + +V
Sbjct: 5   HSTHLLQHPHFYSFHPSRMLSIGILSICLV 34


>Z82059-5|CAB04879.2|  408|Caenorhabditis elegans Hypothetical
           protein T27E9.9 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 453 LFNLLITGATFALPLLYSFFILSILVTPHIHLNI 352
           +FN LI  ATF    LY F+IL + V  +I + I
Sbjct: 247 IFNELI--ATFTFQRLYGFYILQVYVPAYISVFI 278


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 148 FLKKHYNQISLRRFNLNIHSDKIHYQLHVF 59
           +L+K Y   S    NLNI  DK+H  +H F
Sbjct: 198 YLEK-YGDFSFNVSNLNIELDKLHEMVHDF 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,436,694
Number of Sequences: 27780
Number of extensions: 251070
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)