Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.12 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   0.87 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   0.87 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.6  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   4.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   6.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 536 HYHIHTSPSHMHLSPLYASHIHTT 465
           H HIH +P H H       H H+T
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHST 446


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 374 VTRMDKIKNEYSRGSAKVAPVINKLKSGR 460
           + + +K   E  +GS K A V++KLK+ R
Sbjct: 39  IEKFEKEAQEMGKGSFKYAWVLDKLKAER 67


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 374 VTRMDKIKNEYSRGSAKVAPVINKLKSGR 460
           + + +K   E  +GS K A V++KLK+ R
Sbjct: 39  IEKFEKEAQEMGKGSFKYAWVLDKLKAER 67


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 421 ESSPGNQQIKERTVSVVWICD 483
           E  PGN  +K++++++ W+ +
Sbjct: 171 EVVPGNMGLKDQSMALRWVSE 191


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 421 ESSPGNQQIKERTVSVVWICD 483
           E  PGN  +K++++++ W+ +
Sbjct: 42  EVVPGNMGLKDQSMALRWVSE 62


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 421 ESSPGNQQIKERTVSVVWICD 483
           E  PGN  +K++++++ W+ +
Sbjct: 171 EVVPGNMGLKDQSMALRWVSE 191


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 EPVLLISIRYILFFGTIINSV 305
           EP+LLI+  Y L+ G +   +
Sbjct: 118 EPILLIAYIYHLYMGLLSGGI 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,984
Number of Sequences: 438
Number of extensions: 3148
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)