Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0242
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    31   0.66 
At2g34770.1 68415.m04269 fatty acid hydroxylase (FAH1) identical...    29   2.7  
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    28   4.6  
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    28   4.6  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    28   4.6  
At4g16040.1 68417.m02433 hypothetical protein                          27   6.1  
At5g06640.1 68418.m00750 proline-rich extensin-like family prote...    27   8.1  

>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 480 TYPHHANRPLFNL-LITGATFALPLLYSFFILSILVTPHIHLN 355
           T PHH  R   N  L+   +  LPL Y+  +L    T H+H N
Sbjct: 196 TTPHHHPRSTTNTNLLLLRSITLPLRYTILLLLQYTTTHLHTN 238


>At2g34770.1 68415.m04269 fatty acid hydroxylase (FAH1) identical to
           fatty acid hydroxylase Fah1p GB:AF021804 GI:2736147 from
           [Arabidopsis thaliana]
          Length = 237

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 394 YLVHSCHSTHPSQHSHL 344
           YL+H CH  HP  H  L
Sbjct: 120 YLIHGCHHKHPMDHLRL 136


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
           domain-containing protein / F-box family protein similar
           to SP|P36607 DNA repair protein rad8
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 364 PSQHSHLCRMHSSFMLYLLLTELIIVPKN--NIYLIEISK 251
           P+    LC+   +F LYL    LI+VP N  N +L +I K
Sbjct: 735 PALKVALCQPLDTFRLYLSKATLIVVPTNLVNHWLTQIQK 774


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 539 LHYHIHTSPSHMHLSPLYASHIHTTLT---VRSLIC*LPGLLSHFLCYTHSLSCPFLSLH 369
           L+Y +H +  H  L   Y SH H+++    + S+I      +++F+ +   L    L+  
Sbjct: 141 LYYWLHKALHHHFLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKT 200

Query: 368 TSISTFA 348
            SI +FA
Sbjct: 201 ASIISFA 207


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = -2

Query: 539 LHYHIHTSPSHMHLSPLYASHIHTTLT---VRSLIC*LPGLLSHFLCYTHSLSCPFLSLH 369
           L+Y +H +  H  L   Y SH H+++    + S+I      +++F+ +   L    L+  
Sbjct: 141 LYYWLHKALHHHFLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFILFAIPLLTTLLTKT 200

Query: 368 TSISTFA 348
            SI +FA
Sbjct: 201 ASIISFA 207


>At4g16040.1 68417.m02433 hypothetical protein
          Length = 90

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 334 HSSFMLYLLLTELIIVPKNNIYLIEISKTGSYYRIEIE 221
           +   + YL +T L+++   +IY++ ISK  +Y    IE
Sbjct: 52  YDQILYYLFVTPLMLLINPSIYILLISKDTTYISSSIE 89


>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 689

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 542 TLHYHIHTSPSHMHLSPLYASH 477
           T HY+   SPSH H SP YA H
Sbjct: 59  TPHYN---SPSHEHKSPKYAPH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,262,472
Number of Sequences: 28952
Number of extensions: 215558
Number of successful extensions: 493
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)