Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0241
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    63   2e-12
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   4.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 62.9 bits (146), Expect = 2e-12
 Identities = 28/61 (45%), Positives = 43/61 (70%)
 Frame = +3

Query: 90  MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
           +T+FE  G+ P + + +++  +T PT +Q  AIP+IL G D++  A+TGSGKT AF LPI
Sbjct: 157 ITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPI 216

Query: 270 L 272
           +
Sbjct: 217 I 217


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 286 SQTICNIGKQNAPVFPLPVSAAISTSPPPKIRGIASAW 173
           S+T  ++G    P++P P          P++  +A++W
Sbjct: 151 SKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASW 188


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 286 SQTICNIGKQNAPVFPLPVSAAISTSPPPKIRGIASAW 173
           S+T  ++G    P++P P          P++  +A++W
Sbjct: 43  SKTAGSMGLTRPPMYPFPAGQYPYPILSPEMSQVAASW 80


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 341 RRLCYYFTGFSFLHIFQG 288
           +R CYY+  F  +H+  G
Sbjct: 111 KRYCYYYYAFFGVHLAYG 128


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 220 WQLKLAVERQEHSVYLY 270
           WQ+ L+ E ++++ +LY
Sbjct: 401 WQIPLSPESRQYTAFLY 417


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 621 HQIAYNLISCLYHQIHS 571
           HQ  YN +S L   +HS
Sbjct: 392 HQYGYNTLSPLPSSVHS 408


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,203
Number of Sequences: 336
Number of extensions: 3824
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)