Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0241
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 70 3e-13
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 64 2e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 4e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 2e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 54 3e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 53 4e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 52 6e-08
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 52 8e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 50 3e-07
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 50 4e-07
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 48 9e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 9e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 1e-06
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 48 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 47 2e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 46 7e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 9e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 6e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 8e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 37 0.003
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 35 0.013
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 34 0.022
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.36
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.62
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 28 1.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 1.9
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 4.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 4.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 70.1 bits (164), Expect = 3e-13
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F+E GV+ E+ +A E++ + PT +Q EAIP++L DV+ A+TGSGKT AF LP++Q
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 279 VW 284
+W
Sbjct: 108 LW 109
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 63.7 bits (148), Expect = 2e-11
Identities = 30/74 (40%), Positives = 48/74 (64%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F +F + P + +AI + ++ PT VQ+E IPL L G D++ A TGSGKT A+ +PIL++
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 279 VWETLKDMQEGKTG 320
+ + K + E + G
Sbjct: 76 LLKQ-KQIDENQRG 88
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 63.7 bits (148), Expect = 2e-11
Identities = 34/89 (38%), Positives = 52/89 (58%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F + + I KAI+EM + T++Q +IP +L G DVL AA+TGSGKT AF +P +++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMSFF 365
++ LK TG +I + E + F
Sbjct: 151 LY-ALKFKPRNGTGVIIISPTRELALQIF 178
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/78 (38%), Positives = 47/78 (60%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+T++ + G+ + I + + PT +QA+AIP I G DV+ A+TGSGKT AF LP
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLP- 475
Query: 270 LQIVWETLKDMQEGKTGK 323
++ +KD + KTG+
Sbjct: 476 ---MFRHIKDQRPLKTGE 490
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 54.0 bits (124), Expect = 2e-08
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F+ + + A+ + T VQA AIPL L D+++ A TGSGKT A+ LP
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 276 IVWETLKDMQEGKTGKVITQTSSECTMSFFDRT-DALAVTPDGL 404
V T +D E G +I + E F+ T + LA PD L
Sbjct: 62 KV--TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSL 103
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F+ G+ + +AI + + PT +Q + IPL+L G DV+ A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 279 VWETL 293
+ TL
Sbjct: 131 LKSTL 135
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
++F+ + I K + + + +PT +Q + IPL L G D++ AA TGSGKT AF +PIL
Sbjct: 259 SSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPIL 318
Query: 273 Q 275
+
Sbjct: 319 E 319
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 52.8 bits (121), Expect = 4e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T FE++ + E+ I E + P+ +Q E+IP+ L G D+L A+ G+GKT AF +P L
Sbjct: 44 TEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSL 103
Query: 273 QIVWETLKDMQE---GKTGKVITQTSSEC 350
+ V +Q T ++ QTS C
Sbjct: 104 EKVDTKKSKIQTLILVPTRELALQTSQVC 132
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.4 bits (120), Expect = 6e-08
Identities = 23/58 (39%), Positives = 41/58 (70%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+EE G+ E+ K ++++++ P+ +Q AIP++L D++ AETGSGKT AF +P++
Sbjct: 251 WEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLI 308
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 52.0 bits (119), Expect = 8e-08
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP- 266
+T FEE G + K ++++ + PT +Q +A P+ + G D++ + TGSGKT ++CLP
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 267 ILQIVWETLKDMQEGKTGKVITQT 338
I+ I + L +G V+ T
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPT 204
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 153 WTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 287
+T PT VQ +IP++ G D++ A+TGSGKT F PIL + ++
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFD 233
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F++ + PE+ + I + P+ +Q AI ILG DVL A++G+GKT F + +LQ
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 279 VWETLKDMQ 305
+ +LK Q
Sbjct: 81 IDTSLKQCQ 89
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 48.4 bits (110), Expect = 9e-07
Identities = 25/61 (40%), Positives = 36/61 (59%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T F +F + PE+ +AI + + P++VQ IP + G DVL A++G GKT F L L
Sbjct: 51 TGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTL 110
Query: 273 Q 275
Q
Sbjct: 111 Q 111
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 9e-07
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F E + A++ + T++Q + IP L G D+L AA+TGSGKT AF +P+++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMSF 362
++ +G VI+ T +F
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTF 128
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F + G+ P + ++ + PTD+Q I IL G + + A+TGSGKT AF LPI++
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+++FEE + ++ + I + P+ VQ+ AI I G DV+ A++G+GKT F + I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79
Query: 270 LQIVWETLKDMQ 305
LQ + +++D Q
Sbjct: 80 LQSIDLSVRDTQ 91
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 47.2 bits (107), Expect = 2e-06
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
F+E V ++ + ++ ++ PT +QA P +L G DV+ AETGSGKT AF +P LQ
Sbjct: 169 FDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ 225
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 45.6 bits (103), Expect = 7e-06
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGG--GDVLMAAETGSGKTGAFC 260
++ +FEE + PE+ K I M + P+ +Q +A+PL+L +++ +++G+GKT AF
Sbjct: 112 SVKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFA 171
Query: 261 LPILQIV 281
L +L V
Sbjct: 172 LTMLSRV 178
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/63 (34%), Positives = 40/63 (63%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 266
+++A+ F + PE+ ++ + ++ P +Q+ IP G D++ A+TGSGKT AF +P
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 267 ILQ 275
IL+
Sbjct: 180 ILE 182
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.1 bits (87), Expect = 6e-04
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +3
Query: 102 EEF--GVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
EEF G+L E +++ + T T +Q AIP I D+L A TGSGKT A+ PILQ
Sbjct: 50 EEFPEGILCE---NLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQ 106
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 8e-04
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +3
Query: 144 EMDWTLPTDVQAEAIPLILGGGD--VLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKT 317
+M+ + PT +Q+ +P +L D + A+TGSGKT A+ LPI+Q + K++ +
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 318 G--KVITQTSSECTMSFFDRTDALAVTP 395
G VI + E ++ + L P
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNP 243
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILG----------GGDVLMAAETGSGKT 248
F + ++ + +++ + T VQA +PL+L GGDV ++A TGSGKT
Sbjct: 128 FSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKT 187
Query: 249 GAFCLPILQ 275
++ +PI+Q
Sbjct: 188 LSYVIPIVQ 196
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 34.7 bits (76), Expect = 0.013
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Frame = +3
Query: 465 TKGAYYFEATVT----DEGL-CRVGWSTQAAKLD--LGTDRLGYGFGGTG-KKSNCKQFD 620
T G +YFE + D+G R+G S + A LD +G D YG G +K + +
Sbjct: 386 TSGEWYFEIKIEKGGGDDGAHVRIGVSRREAPLDAPVGYDAYSYGLRDLGGQKVHMSRPR 445
Query: 621 DYGEAYGMNDVIGCFLNL 674
++ +++G D+IG ++L
Sbjct: 446 NFMDSFGTGDIIGLHISL 463
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 33.9 bits (74), Expect = 0.022
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +3
Query: 477 YYFEATVTD---EGLCRVGWSTQAAKLDL--GTDRLGYGF-GGTGKKSNC-KQFDDYGEA 635
YY+E + EG VG+ ++ + + G +G+ G +G+K NC K + YG
Sbjct: 114 YYYEIQILSRGKEGKMGVGFCRKSMQTNRLPGCTAESWGYHGNSGEKFNCSKTGEAYGPE 173
Query: 636 YGMNDVIGCFLN 671
+ D+IGC +N
Sbjct: 174 FTTGDIIGCGVN 185
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 174 QAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 287
QA+AI + G V+++ T SGK+ + +PILQ + E
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLE 353
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.62
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -1
Query: 400 PSGVTASASVRSKNDIVHSEDVCVITLPVFPSCISFKVSQTICNIGKQNAPVFP-LPVSA 224
P T+S S+ S D LP + S S +I G PV P +P ++
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPT--TSTSCTTSTSIPPTGNSTTPVTPTVPPTS 309
Query: 223 AISTSPPPKIRGIASAWTSVGRVQSISS 140
STS PP +S TS + S S+
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTST 337
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 319 PVFPSCISFKVSQTICNIGKQNAPVFP-LPVSAAISTSPPPKIRGIASAWTSVGRVQSIS 143
P+ + S S +I G PV P +P ++ STS PP +S TS + S S
Sbjct: 331 PLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTS 390
Query: 142 S 140
+
Sbjct: 391 T 391
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 210 DVLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKTGKVITQTSSECTMSFFDRTDAL 383
+ ++ A+TG+GKT AF L + V + + K VI + E + F+ L
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKL 135
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 171 VQAEAIPLILGGGD-VLMAAETGSGKTGAFCLPILQIVWETLKD 299
+Q+ P+ G + +L+ A TG+GKT L IL + + L++
Sbjct: 523 IQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLRE 566
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 27.5 bits (58), Expect = 1.9
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = -1
Query: 382 SASVRSKNDIVHSEDVCVITLPVFPSCISFKVSQTICNIGKQNAPVFPLPVSAAISTSPP 203
S+SV S ++I S +P S I+ ++ N V VS+A ++S
Sbjct: 201 SSSVASSSEI--SAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAASSSA 258
Query: 202 PKIRGIASAWTSVGRVQSISSIALPISGSTPNSS 101
+ + S+ TSV +ISS + ++P SS
Sbjct: 259 V-VSSVVSSATSVAASSTISSATSSSASASPTSS 291
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 174 QAEAIPLILGGGDVLMAAETGSGKTGAFCLP 266
Q EAI L G DV + TG GK+ + LP
Sbjct: 524 QLEAINGTLSGKDVFILMPTGGGKSLCYQLP 554
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.6 bits (56), Expect = 3.3
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = -1
Query: 403 NPSGVTASASVRSKNDIVHSEDVCVITLPVFPSCISFKVSQTICNIGKQNAPVFPLPVSA 224
N S S+SV + + + S + P+ S + S I + N+ P+ S
Sbjct: 1591 NTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV-LNSSTPITSSTVLNSST-PITSST 1648
Query: 223 AISTSPPPKIRGIASAWTSVGRVQSISSIALPISGST-PNSSKAV 92
A++TSPP + ++ T + ++ + + PI+ ST NSS +
Sbjct: 1649 ALNTSPPITSSTVVNSSTPI-TSSTVVNTSTPITSSTVVNSSTPI 1692
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 536 LCRPADTA*ALISDSGFKVICTFRMNTFGCP 444
L P DTA + D + + T +NTF CP
Sbjct: 705 LLGPTDTAVFVKPDLSLEKLPTLEINTFNCP 735
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 204 GGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKTGKVITQTSSECTMSF-FDRTDA 380
GG++ M ++ K G+FC ++++ ++ +++ K I + S +S+ + A
Sbjct: 795 GGNIDMVSQLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAA 854
Query: 381 LAVTPDGLR 407
TP+ LR
Sbjct: 855 HVFTPEDLR 863
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/103 (23%), Positives = 44/103 (42%)
Frame = -1
Query: 397 SGVTASASVRSKNDIVHSEDVCVITLPVFPSCISFKVSQTICNIGKQNAPVFPLPVSAAI 218
S +++S+S+ + + S + I+ + S I S + + P S +I
Sbjct: 537 SVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSS--PSSTSLSI 594
Query: 217 STSPPPKIRGIASAWTSVGRVQSISSIALPISGSTPNSSKAVI 89
S+S AS + SISS + +S TP++S +I
Sbjct: 595 SSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMI 637
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,549
Number of Sequences: 5004
Number of extensions: 64093
Number of successful extensions: 184
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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