Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0241
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 146 1e-35
SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14) 70 2e-12
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 62 5e-10
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 52 3e-07
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 51 1e-06
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 50 1e-06
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 50 1e-06
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 2e-06
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 49 3e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 48 7e-06
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 44 1e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 43 3e-04
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 41 0.001
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 40 0.001
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 40 0.002
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 38 0.006
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 37 0.013
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 37 0.017
SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.053
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 31 0.86
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10) 29 3.5
SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041) 29 3.5
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 29 3.5
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 29 4.6
SB_53785| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19) 28 6.1
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06) 28 6.1
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 8.0
SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_7710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05) 28 8.0
SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5) 28 8.0
SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016) 28 8.0
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 146 bits (354), Expect = 1e-35
Identities = 65/100 (65%), Positives = 78/100 (78%)
Frame = +3
Query: 381 LAVTPDGLRCQSRNQKDWHGCRATKGVHTKGAYYFEATVTDEGLCRVGWSTQAAKLDLGT 560
LA+ +G CQSR+ W GCR+T GV KG YY+EATVTDEGLCRVGWST A LDLGT
Sbjct: 4 LAIDKEGYLCQSRDFYKWQGCRSTLGVK-KGKYYYEATVTDEGLCRVGWSTAHATLDLGT 62
Query: 561 DRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIGCFLNLNS 680
D G+GFGGTGKKS +QFD YGE +G+ND IGC++NL++
Sbjct: 63 DEEGFGFGGTGKKSYNRQFDTYGEPFGINDTIGCYINLDN 102
>SB_50155| Best HMM Match : SPRY (HMM E-Value=7.7e-14)
Length = 453
Score = 70.1 bits (164), Expect = 2e-12
Identities = 30/63 (47%), Positives = 41/63 (65%)
Frame = +3
Query: 492 TVTDEGLCRVGWSTQAAKLDLGTDRLGYGFGGTGKKSNCKQFDDYGEAYGMNDVIGCFLN 671
T T + RVGWS +A L +G D L YG+GGT K S +F DYGE Y ND+I C+++
Sbjct: 6 TETTPHVVRVGWSVDSANLQVGEDALSYGYGGTAKCSVSNKFFDYGERYSSNDIITCYID 65
Query: 672 LNS 680
L++
Sbjct: 66 LDA 68
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 61.7 bits (143), Expect = 5e-10
Identities = 31/88 (35%), Positives = 47/88 (53%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F +F + + + + PTD+Q + IP+ L G DVL AA+TGSGKT AF +PI++
Sbjct: 52 FSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKTLAFLIPIIET 111
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMSF 362
+W +G VI+ T +F
Sbjct: 112 LWRQKWTSMDGLGALVISPTRELAYQTF 139
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 61.7 bits (143), Expect = 5e-10
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Frame = +3
Query: 438 GCRATKGVHTKGAYYFEATVTDEG------------LCRVGWSTQAAKLDLGTDRLGYGF 581
G RAT G T G FE +T+ RVGWS+ +A L LG L YGF
Sbjct: 310 GVRATYGA-TSGKICFECKLTETAEVDLPDTEEPKHFVRVGWSSDSANLQLGEVALSYGF 368
Query: 582 GGTGKKSNCKQFDDYGEAYGMNDVIGCFLNLNS 680
TGKK +F ++G+ + DVI C+L+L S
Sbjct: 369 DSTGKKCTNNEFTEFGQTFTAGDVITCYLDLES 401
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+F FG ++ +I ++++T PT +Q +A+P+ L G D++ A+TGSGKT AF P L
Sbjct: 518 SFAHFGFDEQMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPAL 576
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 266
++ +FEE + + + + PT VQ +IP+++ G DV+ A+TGSGKT AF LP
Sbjct: 709 HINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKTAAFLLP 768
Query: 267 IL 272
++
Sbjct: 769 VM 770
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIP-LILGGGDVLMAAETGSGKTGAFCL 263
+M +E GV P+I +A+ + ++ PT +Q+ +IP +L D++ AAETGSGKT AF +
Sbjct: 128 DMPEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGI 187
Query: 264 PILQ 275
PI+Q
Sbjct: 188 PIIQ 191
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/78 (33%), Positives = 51/78 (65%)
Frame = +3
Query: 132 KAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQEG 311
+ I++M +T T++Q ++I +L G D+L AA+TGSGKT AF +P+++++++ + G
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNG 644
Query: 312 KTGKVITQTSSECTMSFF 365
TG +I + E ++ +
Sbjct: 645 -TGVIIISPTRELSLQTY 661
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/48 (50%), Positives = 32/48 (66%)
Frame = +3
Query: 132 KAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+A+ E+ + PT +QA IP+ L G DV A TG+GKT AF LPIL+
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKTAAFMLPILE 70
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+T+F E ++ I + PT VQ A+P+++ G D++ A+TGSGKT A+ LP+
Sbjct: 478 ITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPV 537
Query: 270 L 272
L
Sbjct: 538 L 538
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 50.8 bits (116), Expect = 1e-06
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F + + PE+ + + ++ +PT +Q +++ ++ G D++ AETGSGKT A+ LP+
Sbjct: 73 SFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSLPLCM 132
Query: 276 IVWETLKDMQEGKT--GKVITQTSSECTMSFFDRTDALAV 389
++ T G T ++T T F + ++ L V
Sbjct: 133 LL-RTKAPSNPGDTPVALILTPTRELMQQVFMNVSEMLDV 171
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + E+ I E + P+ +Q E+IP+ L G D+L A+ G+GKT A+ +P+L+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 279 VWETLKDMQE---GKTGKVITQTSSEC 350
T +Q T ++ QTS C
Sbjct: 109 TDTTKNCIQALVLVPTRELALQTSQIC 135
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + E+ I E + P+ +Q E+IP+ L G D+L A+ G+GKT A+ +P+L+
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLLER 108
Query: 279 VWETLKDMQE---GKTGKVITQTSSEC 350
T +Q T ++ QTS C
Sbjct: 109 TDTTKNCIQALVLVPTRELALQTSQIC 135
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
++E + I + ++++ + PT +Q +AIP+ L D++ AETGSGKT AF +P+L
Sbjct: 103 WKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFAIPLL-- 160
Query: 279 VW 284
VW
Sbjct: 161 VW 162
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/38 (57%), Positives = 27/38 (71%)
Frame = +3
Query: 162 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
PT++Q +P IL G D + A+TGSGKT AF LPILQ
Sbjct: 30 PTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQ 67
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 48.4 bits (110), Expect = 5e-06
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +3
Query: 162 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVW 284
PT VQ AIP++ G D++ A+TGSGKT AF +PIL ++
Sbjct: 898 PTPVQKYAIPIVKGKRDLMACAQTGSGKTAAFLIPILSRIY 938
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 48.0 bits (109), Expect = 7e-06
Identities = 21/59 (35%), Positives = 37/59 (62%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
F FGV P++ + +++M T P +Q +A+P + +L+ +ETG+GK+ F LP +Q
Sbjct: 162 FSNFGVHPKLVEKLKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKSLVFLLPSVQ 220
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKT 248
++ +FEE + + + + PT VQ +IP+++ G DV+ A+TGSGKT
Sbjct: 132 HINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRDVMACAQTGSGKT 185
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+F G+ ++ KA++ ++ PT +Q IP I+ V+ AA+TGSGKT A+ P++
Sbjct: 379 SFAGLGLRDDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKTLAYLAPLV 437
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +3
Query: 162 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQ 305
P+ +Q AI IL G DV+ A++G+GKT F + +LQ + L++ Q
Sbjct: 20 PSAIQQRAIKPILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQ 67
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAA--ETGSGKTGAFCLPI 269
+FEE + + + + +M + P+ +Q A+P++L V M A ++G+GKT AF L +
Sbjct: 104 SFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNMIAQSQSGTGKTAAFVLTM 163
Query: 270 LQIV 281
L V
Sbjct: 164 LSRV 167
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F +F + + +E+ T +QA I G DV+ A TG+GKT +F LP+++
Sbjct: 75 FSKFRISQKTIDNLEDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEK 134
Query: 279 VWETLKDMQEGKTGKVI 329
+ + + G+ KV+
Sbjct: 135 LQDGKLSQKRGRAPKVL 151
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/67 (40%), Positives = 37/67 (55%)
Frame = +3
Query: 210 DVLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKTGKVITQTSSECTMSFFDRTDALAV 389
DV+ AETGSGKTGAF LPILQ L D + ++T T E ++ +AL
Sbjct: 3 DVIGLAETGSGKTGAFALPILQ----ALLDNPQRLFALILTPT-RELAFQISEQCEALG- 56
Query: 390 TPDGLRC 410
+ G++C
Sbjct: 57 SGIGVKC 63
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +3
Query: 180 EAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+ +PL++ G DV+ A TGSGKT AF +P+ +
Sbjct: 310 KTLPLVMDGKDVVAMARTGSGKTAAFLIPMFE 341
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 126 IGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGK 245
+ K + + PT +Q + +P++L G DV++ A TGSGK
Sbjct: 207 LSKNLSNHGYHSPTPIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 37.1 bits (82), Expect = 0.013
Identities = 28/105 (26%), Positives = 49/105 (46%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F + P + + + E + P+ +Q +AIPL G D++ A++G+GKT F + L+
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALEN 74
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMSFFDRTDALAVTPDGLRCQ 413
V +Q +I + E + D A+ DGL C+
Sbjct: 75 VITESNCIQ-----IIILTPTREIAVQVKDVICAIGCHYDGLACK 114
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +3
Query: 156 TLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWET 290
T+PT +Q P +L G DV A GSGK A+ LPI+ + E+
Sbjct: 208 TVPTSLQKHMWPSLLRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
>SB_17696| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 87 NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAI-PLILGGGDVLMAAET 233
+M+ +E GV P+I +A+ + ++ PT +Q+ +I P +L D++ AAET
Sbjct: 70 DMSEWEGLGVAPDILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAET 119
>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1273
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Frame = +3
Query: 462 HTKGAYYFEATVTDEGLCRVGWSTQAAK------LDLGTDRLGYGFGGTGKK-----SNC 608
H G +Y+E + G+ ++GW T+ + + +G D+ F G K +
Sbjct: 797 HPSG-WYYEVILKSNGIMQIGWQTEECRYGPERGVGVGDDKHSCAFDGARCKIWSGPPSE 855
Query: 609 KQFDDYGEAYGMNDVIGCFLN 671
+Q +DYG + + DV+ C +
Sbjct: 856 QQNNDYGVEWQIGDVLSCLFS 876
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 32.3 bits (70), Expect = 0.37
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 195 ILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKD 299
+L DV+ A++G+GKT F + ILQ + KD
Sbjct: 119 VLSARDVIAQAQSGTGKTATFAISILQEIDTNYKD 153
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 120 PEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP 266
PE+ KA+ ++ ++ Q +A+ IL G L+ TG+GK+ + LP
Sbjct: 511 PEVYKALGQLGFSSFRAGQEQAVMRILSGMSSLVVLSTGAGKSLCYQLP 559
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 111 GVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAET 233
GV +I +++ + PT +QA+AIP+I+ G D++ T
Sbjct: 111 GVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/34 (35%), Positives = 24/34 (70%)
Frame = +3
Query: 213 VLMAAETGSGKTGAFCLPILQIVWETLKDMQEGK 314
+++ A TGSGKT F L I++++ ++ +D++ K
Sbjct: 353 LVVCAPTGSGKTVIFELAIIRLIMKSAEDIRRTK 386
>SB_6295| Best HMM Match : WSC (HMM E-Value=3.8e-10)
Length = 281
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 564 RLGYGFGGTGKKSNCKQFDDYGEAYGMND 650
+LGY F G + C+ +DYG YG+ D
Sbjct: 59 QLGYMFFGLQDTTECRCDNDYGGVYGLAD 87
>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
Length = 428
Score = 29.1 bits (62), Expect = 3.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Frame = -1
Query: 406 RNPSGVTASASVRSKNDIVHSEDVCVITLPVFPSCISFKVSQ--TICNIGKQNAPVFPLP 233
++PS +T + VRS +VHS + P S + +SQ T P L
Sbjct: 197 QDPSPMTTTEMVRSLTAMVHSAGQSIKDSPSASSPLVKAISQIETSATATSLIRPTITLN 256
Query: 232 VSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPISGS 116
+A++TS P + TS VQS S+ I+ S
Sbjct: 257 TGSAMTTSIGPTMNP-----TSSEHVQSTKSLTFEITSS 290
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/50 (24%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -3
Query: 149 HFFNSFAY-FRQHTKFFES-SHILKNYAILNSVFSFIQHTVCRVCTMYAH 6
H + ++A+ +R + + + + +H+ + YA + ++ + T RV YAH
Sbjct: 735 HVYRTYAHVYRTYARVYRTYAHVYRTYAHVYRPYAHVYRTYARVYRTYAH 784
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 414 SRNQKDWHGCRATKGVHTKGAYYFEATVTDEGLCRVGW 527
+R Q +W C VH K ++F + V D C+ W
Sbjct: 636 TRYQHEWRVCHPRADVHLKVCHFFSSQVVDTA-CQHKW 672
>SB_53785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +3
Query: 516 RVGWSTQAAKLDLGTDRLGYGFGGTGKKSNC 608
RVG+ T A RLG GF G GK S C
Sbjct: 6 RVGFPTVALLAGARQRRLGLGFKGGGKSSVC 36
>SB_51441| Best HMM Match : DEAD (HMM E-Value=4.9e-19)
Length = 304
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 171 VQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+Q +AI +L D L+ TG+GKT + +P L
Sbjct: 143 MQRQAIDTLLAEKDSLILLPTGAGKTICYAIPAL 176
>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +3
Query: 561 DRLGYGFGGTGKKSNCKQFDD--YGEAYGMNDVIGCFLNL 674
++ YG+ G S C YG + DVIGC LNL
Sbjct: 85 EKNSYGYHGDDGHSFCSSGTGKPYGPTFTTGDVIGCGLNL 124
>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
Length = 863
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 244 FPLPVSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPISGSTPNSSKA 95
F P S++ S+SPPP +S+ +S S SS + S S+ +SS +
Sbjct: 569 FVSPPSSSSSSSPPPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 618
>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 271 NIGKQNAPVFPLPVSAAISTSP--PPKIRGIASAWTSVGRVQSISSIALPIS 122
++GK +PV P+P +S+SP P + + S + R +S ++ A+ S
Sbjct: 215 SVGKPKSPVVPMPTHGQLSSSPTSPSALNTLGSTKKTHHRSKSDATAAIVAS 266
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 235 PVSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPISGSTPNSSKAV 92
P ++ S + P ++G +A TS QS S P+S ++P+SS V
Sbjct: 370 PAESSKSPTSPLSLQGSEAALTSPVPQQSELSTTSPMSSTSPHSSDLV 417
>SB_47089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 492
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 235 PVSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPISGSTPNSSKAV 92
P ++ S + P ++G +A TS QS S P+S ++P+SS V
Sbjct: 25 PAESSKSPTSPLSLQGSEAALTSPVPQQSELSTTSPMSSTSPHSSDLV 72
>SB_7710| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 301 ISFKVSQTICN-IGKQNAPVFPLPVSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPI 125
++ +V+QT+ + + +Q P+ +AAI +PP + + T++ SISSI +
Sbjct: 60 VTAEVTQTVTSEVTRQLLPLIQQAQTAAIPDNPP--VLPLEPLPTAIVE-DSISSIQDAL 116
Query: 124 SGSTPNSS 101
SG PN S
Sbjct: 117 SGMEPNQS 124
>SB_58407| Best HMM Match : TNFR_c6 (HMM E-Value=3.5e-05)
Length = 511
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Frame = -1
Query: 274 CNI-GKQNAP--VFPLPV-----SAAISTSPPPKIRGIASAWTSVGRVQSISSIALPISG 119
CN+ GK+ V P+P S A+++S PP + + SVG +Q+ SI+L
Sbjct: 140 CNLDGKKRCTPKVTPIPSTTATPSTAVTSSTPPTSTSMQTTKHSVGHLQTTVSISLKKET 199
Query: 118 STPNSSKAV 92
N +++V
Sbjct: 200 KPKNETESV 208
>SB_42986| Best HMM Match : Glycos_transf_4 (HMM E-Value=1.5)
Length = 279
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 349 HSEDVCVITLPVFPSCISFKVSQTICNIGKQNAPVFPLPVSAAISTSPPP 200
+S DV +T VF + +VSQT + Q+ P P S S+SPPP
Sbjct: 66 NSFDVLTMTKVVFRT---MRVSQTRSSSSSQSLPPPPSLSSQTSSSSPPP 112
>SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 700
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = -1
Query: 301 ISFKVSQTICN-IGKQNAPVFPLPVSAAISTSPPPKIRGIASAWTSVGRVQSISSIALPI 125
++ +V+QT+ + + +Q P+ +AAI +PP + + T++ SISSI +
Sbjct: 26 VTAEVTQTVTSEVTRQLLPLIQQAQTAAIPDNPP--VLPLEPLPTAIVE-DSISSIQDAL 82
Query: 124 SGSTPNSS 101
SG PN S
Sbjct: 83 SGMEPNQS 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,171
Number of Sequences: 59808
Number of extensions: 490941
Number of successful extensions: 1252
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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