Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0241
(682 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 76 2e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 61 6e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 61 8e-10
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 61 8e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 58 5e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 58 7e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 57 1e-08
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 56 2e-08
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 56 2e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 56 2e-08
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 56 2e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 56 3e-08
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 55 5e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 54 7e-08
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 54 7e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 54 7e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 54 9e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 54 1e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 4e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 4e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 5e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 51 6e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 51 6e-07
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 51 6e-07
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 51 8e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 51 8e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 51 8e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 51 8e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 1e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 1e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 50 1e-06
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 50 1e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 50 1e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 50 1e-06
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 50 2e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 48 4e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 48 4e-06
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 48 6e-06
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 48 6e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 48 8e-06
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 48 8e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 48 8e-06
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 47 1e-05
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 46 2e-05
At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY) domain-c... 46 2e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 46 3e-05
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 44 7e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 44 9e-05
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 44 9e-05
At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger) fa... 42 3e-04
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 42 4e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 41 7e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 41 9e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 9e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 40 0.002
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 39 0.004
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 39 0.004
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 38 0.005
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 38 0.006
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 38 0.006
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 38 0.008
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 38 0.008
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 34 0.076
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 34 0.10
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 33 0.23
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 30 1.6
At1g26760.1 68414.m03258 SET domain-containing protein contains ... 29 3.8
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 28 5.0
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 28 6.6
At1g28340.1 68414.m03481 leucine-rich repeat family protein cont... 28 6.6
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 8.7
At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative si... 27 8.7
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 8.7
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/87 (45%), Positives = 52/87 (59%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F E GV E+ KA E + W P+ +QAEA+P L G DV+ A+TGSGKTGAF +PILQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMS 359
+ E + D E K G+ C +S
Sbjct: 71 LLEYVYD-SEPKKGRRPDPAFFACVLS 96
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLP-ILQ 275
FE+ G +I AI++ + PT +Q +A+P++L G DV+ A+TGSGKT AF LP I+
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 276 IVWETLKDMQEGKTGKVITQT 338
I+ + EG G + T
Sbjct: 290 IMDQPELQRDEGPIGVICAPT 310
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + ++ K I E + P+ +Q E+IP+ L G D+L A+ G+GKTGAFC+P+L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 279 V---WETLKDMQEGKTGKVITQTSSEC 350
+ ++ M T ++ QTS C
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVC 212
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + ++ K I E + P+ +Q E+IP+ L G D+L A+ G+GKTGAFC+P+L+
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 279 V---WETLKDMQEGKTGKVITQTSSEC 350
+ ++ M T ++ QTS C
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVC 212
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
FE + P + AI++ + +PT +Q + +PLIL G DV+ A TGSGKT AF +P+L+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLE 88
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 58.0 bits (134), Expect = 5e-09
Identities = 36/103 (34%), Positives = 55/103 (53%)
Frame = +3
Query: 54 ENTI*NSIIL*NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAET 233
E + + I+ N T FE + K+I+EM + T +QA+AIP ++ G DVL AA T
Sbjct: 142 EKKLEETSIMTNKT-FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAART 200
Query: 234 GSGKTGAFCLPILQIVWETLKDMQEGKTGKVITQTSSECTMSF 362
GSGKT AF +P +++++ + G VI T S+
Sbjct: 201 GSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSY 243
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
FE++ + ++ + I E + P+ +Q E+IP+ L G D+L A+ G+GKTGAFC+P L+
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/59 (44%), Positives = 41/59 (69%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+FEE G+ + ++E +++PTDVQ+ A+P I+ G D ++ + TGSGKT A+ LPIL
Sbjct: 111 SFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + E+ I E + P+ +Q E+IP+ L G D+L A+ G+GKT AFC+P+L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 279 VWETLKDMQE---GKTGKVITQTSSEC 350
+ + +Q T ++ QTS C
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVC 219
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE++ + E+ I E + P+ +Q E+IP+ L G D+L A+ G+GKT AFC+P+L+
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 279 VWETLKDMQE---GKTGKVITQTSSEC 350
+ + +Q T ++ QTS C
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVC 219
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
M ++EE + E+ KA+E + P+ +Q AIPL L DV+ AETGSGKT AF LP+
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 270 LQIVWETLKDMQEGKT 317
L + +E +T
Sbjct: 372 LAYISRLPPMSEENET 387
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/60 (48%), Positives = 35/60 (58%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T FE G+ + +E+ PT VQ +P IL G DVL A+TGSGKT AF LPIL
Sbjct: 58 TNFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPIL 117
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F+E G+ E+ A++E++ +PT++Q IP ++ V++ + TGSGKT A+ LPI+Q+
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 279 VWE 287
+ E
Sbjct: 174 MRE 176
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/61 (40%), Positives = 35/61 (57%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+ F E + + I + PT VQ AIP++L G D++ A+TGSGKT AFC PI
Sbjct: 158 VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPI 217
Query: 270 L 272
+
Sbjct: 218 I 218
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/63 (44%), Positives = 39/63 (61%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T F++F + P K IE+ + T VQ +PLIL G D+L A+TG+GKT AF LP +
Sbjct: 80 TRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSI 139
Query: 273 QIV 281
+ V
Sbjct: 140 EAV 142
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 54.4 bits (125), Expect = 7e-08
Identities = 28/60 (46%), Positives = 39/60 (65%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+FEE G+ + +A+ + PT +Q AIP IL G DV+ A+TGSGKT A+ LP+LQ
Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQ 106
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 54.4 bits (125), Expect = 7e-08
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+ F E + + I+ + PT VQ AIP++ G D++ A+TGSGKT AFC PI
Sbjct: 145 VNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPI 204
Query: 270 L 272
+
Sbjct: 205 I 205
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 54.0 bits (124), Expect = 9e-08
Identities = 28/63 (44%), Positives = 40/63 (63%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T F++F + P KAI++ + T VQ +P+IL G DVL A+TG+GKT AF LP +
Sbjct: 382 TRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAI 441
Query: 273 QIV 281
+ V
Sbjct: 442 EAV 444
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
T F+ + + P KAI++ + T VQ +P+IL G DVL A+TG+GKT AF LP +
Sbjct: 54 TRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSI 113
Query: 273 QIV 281
++V
Sbjct: 114 EVV 116
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/84 (36%), Positives = 51/84 (60%)
Frame = +3
Query: 78 IL*NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAF 257
I+ N+T F+ + + AI+EM + T +QA +I +L G DVL AA TGSGKT AF
Sbjct: 85 IMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAF 143
Query: 258 CLPILQIVWETLKDMQEGKTGKVI 329
+P ++++++ + G TG ++
Sbjct: 144 LIPAVELLFKERFSPRNG-TGVIV 166
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.0 bits (119), Expect = 4e-07
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEE-MDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+F G+ ++ ++E M + PT VQA+AIP+IL G DVL+ A TG+GKT A+ P++
Sbjct: 30 SFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLI 89
Query: 273 -QIVWETLK-DMQEGKTGKVITQTSSEC 350
+ + K D G VI T C
Sbjct: 90 HHLQGHSPKVDRSHGTFALVIVPTRELC 117
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/59 (44%), Positives = 35/59 (59%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
F E + + +A E + + PT +QA IPL L G D+ +A TGSGKT AF LP L+
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 138 IEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
I + PT VQ AIP++L D++ A+TGSGKT AFC PI+
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 138 IEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
I + PT VQ AIP++L D++ A+TGSGKT AFC PI+
Sbjct: 166 IRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPII 210
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+++ G+ + A+ + + P+ QA IP IL G DV++AAETGSGKT + PI+
Sbjct: 81 SWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIID 140
Query: 276 IVWETLKDMQ 305
+ T D +
Sbjct: 141 QLTNTALDSE 150
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
M F++ I +AI ++ +T PT +QA+ P+ L G D++ AETGSGKT A+ LP
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223
Query: 270 L 272
L
Sbjct: 224 L 224
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
M F++ I +AI ++ +T PT +QA+ P+ L G D++ AETGSGKT A+ LP
Sbjct: 164 MKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPA 223
Query: 270 L 272
L
Sbjct: 224 L 224
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 50.8 bits (116), Expect = 8e-07
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F + + + + +++ + TDVQ+ AIP L G D+L AA TGSGKT AF +PIL+
Sbjct: 73 FAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEK 132
Query: 279 VWETLKDMQEGKTGKVITQTSSECTMSF 362
+ ++G +I+ T +F
Sbjct: 133 LHRERWSPEDGVGCIIISPTRELAAQTF 160
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/85 (30%), Positives = 43/85 (50%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
FE G+ PEI + + + PT +QA+ P+ L D++ A+TGSGKT + +P +
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 279 VWETLKDMQEGKTGKVITQTSSECT 353
+ D + G T ++ T T
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELAT 521
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +3
Query: 111 GVLPE-IGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 281
G +PE I +EE+ + PTD+Q EA+P + G D ++ A+TGSGKT + L I ++
Sbjct: 81 GFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLI 138
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ- 275
+ + G+ +I ++++++ P +QA+A+P+I+ G D + A+TGSGKT F LP+L+
Sbjct: 398 WHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 457
Query: 276 IVWETLKDMQEGKTGKVITQT 338
I + + +G G V+ T
Sbjct: 458 IKDQPPVEAGDGPIGLVMAPT 478
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
F G+ P++ +E + PT +Q +AIP L G +L +A+TGSGKT +F +PI+
Sbjct: 112 FTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPII 169
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/88 (29%), Positives = 47/88 (53%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+ +FE G PE+ + + ++ PT +QA++ P+ + G D++ A+TGSGKT + +P
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 270 LQIVWETLKDMQEGKTGKVITQTSSECT 353
+ D + G T V++ T T
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELAT 244
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/88 (29%), Positives = 47/88 (53%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+ +FE G PE+ + + ++ PT +QA++ P+ + G D++ A+TGSGKT + +P
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 270 LQIVWETLKDMQEGKTGKVITQTSSECT 353
+ D + G T V++ T T
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELAT 244
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/88 (29%), Positives = 47/88 (53%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+ +FE G PE+ + + ++ PT +QA++ P+ + G D++ A+TGSGKT + +P
Sbjct: 157 LMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPG 216
Query: 270 LQIVWETLKDMQEGKTGKVITQTSSECT 353
+ D + G T V++ T T
Sbjct: 217 FLHLQRIRNDSRMGPTILVLSPTRELAT 244
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 90 MTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPI 269
+T+F + G+ ++ + + E + P+ +Q A+ IL G DV+ A++G+GKT L +
Sbjct: 34 ITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSV 93
Query: 270 LQIVWETLKDMQE---GKTGKVITQT 338
Q+V + +++Q T ++ TQT
Sbjct: 94 CQVVDTSSREVQALILSPTRELATQT 119
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +3
Query: 33 YRMLNKTENTI*NSIIL*NMTAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGD 212
+R NKT++T + F E G ++ KA++E ++ P +QA A ++ G
Sbjct: 356 WRERNKTKDTRETGFF--SRKTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKS 413
Query: 213 VLMAAETGSGKTGAFCLPILQ 275
++A ++GSGKT A+ +P++Q
Sbjct: 414 CIIADQSGSGKTLAYLVPVIQ 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ- 275
+ + G+ +I ++++++ P +Q +A+P+I+ G D + A+TGSGKT F LP+L+
Sbjct: 531 WHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRH 590
Query: 276 IVWETLKDMQEGKTGKVITQT 338
I + + +G G V+ T
Sbjct: 591 IKDQPPVEAGDGPIGLVMAPT 611
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+ F +F + PE+ +AI + + P++VQ E IP + G DV+ A++G GKT F L L
Sbjct: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
Query: 273 Q 275
Q
Sbjct: 106 Q 106
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/61 (39%), Positives = 37/61 (60%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+ F +F + PE+ +AI + + P++VQ E IP + G DV+ A++G GKT F L L
Sbjct: 46 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTL 105
Query: 273 Q 275
Q
Sbjct: 106 Q 106
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 47.6 bits (108), Expect = 8e-06
Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Frame = +3
Query: 93 TAFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLIL-GGGDVLMAAETGSGKTGAFCLPI 269
+A+ + P + K+I +D+ PT +Q + G DV+ AAETGSGKT AF LPI
Sbjct: 190 SAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPI 249
Query: 270 LQIVWETLKDMQEGKTGKVITQTSSECTMSFFD-RTDALAVTP 395
LQ L D +E K GK+ E D AL +TP
Sbjct: 250 LQ----RLLDERE-KVGKLYALKGEEAQKYAADGYLRALIITP 287
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +3
Query: 123 EIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 281
+I +A++ + + T VQAE IP + DV++ A TGSGKT AF LP ++I+
Sbjct: 26 DIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 78
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +3
Query: 123 EIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 281
+I +A++ + + T VQAE IP + DV++ A TGSGKT AF LP ++I+
Sbjct: 27 DIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEII 79
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F + VLP G+ + ++ P+ +QA++ P+ + D++ A+TGSGKT + +P
Sbjct: 231 FNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMH 290
Query: 279 VWETLKDMQEGKTGKVITQTSSECT 353
+ D + G T V++ T T
Sbjct: 291 LQRIHNDSRMGPTILVLSPTRELAT 315
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/53 (43%), Positives = 35/53 (66%)
Frame = +3
Query: 123 EIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIV 281
+I +A+ + D+ T VQA IPL+ DV + A TGSGKT AF +P+++I+
Sbjct: 26 DIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEIL 78
>At1g51450.1 68414.m05791 SPla/RYanodine receptor (SPRY)
domain-containing protein low similarity to DEAD box
protein DDX1 [Gallus gallus] GI:16323037, ryanodine
receptor [Caenorhabditis elegans] GI:1871447; contains
Pfam profile PF00622: SPRY domain
Length = 509
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Frame = +3
Query: 345 ECTMSFFDRTDALAVTPDGLRCQSRNQKDWHGCRATKGVHTKGAYYFEATVT---DEGLC 515
E +S + + + ++ D L S K + RAT+GV +GA+YFE V + G
Sbjct: 272 EICLSKVYKAEKVEISEDRLTAGS--SKGYRMVRATRGV-VEGAWYFEIKVLSLGETGHT 328
Query: 516 RVGWSTQAAKLD--LGTDRLGYGFGG-TGKKSNCKQFDDYG-EAYGMNDVIGCFLNL 674
R+GWST L +G D +GF G K + + Y E Y DVIG ++NL
Sbjct: 329 RLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYINL 385
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +3
Query: 108 FGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+G I + + E+ + PT +Q +AIP++L G + A TGSGKT AF P+L
Sbjct: 146 YGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 138 IEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
++E PT +Q + +P+IL G D++ A TGSGKT F LP++ I
Sbjct: 161 LKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 44.0 bits (99), Expect = 9e-05
Identities = 19/59 (32%), Positives = 37/59 (62%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+F + G + + +++ +T PT +Q++ P+ + G D++ AETGSGKT ++ LP +
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAI 158
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/62 (29%), Positives = 38/62 (61%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F++ G+ ++ + + + + P+++Q A+ IL G DV+ A++G+GKT + + Q
Sbjct: 23 SFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQ 82
Query: 276 IV 281
IV
Sbjct: 83 IV 84
>At2g22010.1 68415.m02614 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 1280
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Frame = +3
Query: 468 KGAYYFEATVTDEGLCRVGWSTQAAKLD----LGTDRLGYGFGGTGKKSNCKQFDDYGEA 635
KG + +E + G+ ++GW+T A +G Y F G K+ + YG++
Sbjct: 146 KGKWMYEVALETSGIQQLGWATLACPFTDQKGVGDADDSYAFDGRRVSKWNKEAEPYGQS 205
Query: 636 YGMNDVIGCFLNLN 677
+ DVIGC ++LN
Sbjct: 206 WVAGDVIGCCIDLN 219
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +3
Query: 162 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
PT +Q + +P++L G D++ A TGSGKT F LP++
Sbjct: 120 PTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI 156
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.1 bits (92), Expect = 7e-04
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F+E + P KA+ T VQ + L G D L+ A+TG+GK+ AF LP ++
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 279 VWETLKDMQEGK 314
V LK M GK
Sbjct: 437 V---LKAMNSGK 445
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIE-EMDWTLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGAFCLPI 269
FE+ + PE+ K + EM + P+ +QA ++P+I+ ++ A GSGKT F L +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGM 152
Query: 270 LQIVWETLKDMQ 305
L V TL++ Q
Sbjct: 153 LSRVDPTLREPQ 164
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 9e-04
Identities = 27/72 (37%), Positives = 37/72 (51%)
Frame = +3
Query: 99 FEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 278
F+E + P KA+ T VQ + L G D L+ A+TG+GK+ AF LP ++
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 279 VWETLKDMQEGK 314
V LK M GK
Sbjct: 390 V---LKAMNSGK 398
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
A E G+ PEI KA+ +Q + + G D++ A TG+GKT AF +PI+
Sbjct: 105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 163
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 171 VQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+QA ++L G D++ A TG GKT AF LPIL+
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILE 156
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 162 PTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQEG 311
P+ +Q+ P +L G D++ A+TGSGKT AF +P + V + K + G
Sbjct: 137 PSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGG 186
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F+ + P++ + I + P+ +Q I G DV+ A++G+GKT FC +LQ
Sbjct: 42 SFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQ 101
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F+ G+ + + I + P+ +Q I G DV+ A++G+GKT FC +LQ
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
+F+ G+ + + I + P+ +Q I G DV+ A++G+GKT FC +LQ
Sbjct: 40 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQ 99
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 96 AFEEFGVLPEIGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
A + G+ PEI KA++ +Q + + G D++ A TG+GKT AF +PI+
Sbjct: 117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 180 EAIPLILGGGDVLMAAETGSGKTGAFCLPIL 272
+AIP L G +L +A+TGSGKT +F +PI+
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPII 32
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +3
Query: 117 LPE-IGKAIEEMDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETL 293
LP+ + +++E+ T +Q + L G D++ A+TG+GKT AF +PI++ + E
Sbjct: 109 LPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEA 168
Query: 294 KD 299
D
Sbjct: 169 GD 170
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 33.9 bits (74), Expect = 0.10
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +3
Query: 120 PEIGKAIEEMDWTLPTDVQAEAIPLILGGG----DVLMAAETGSGKTGAFCLPILQIV 281
P++ KA+E M + VQ +G G D+ + + TGSGKT ++ LPI+Q++
Sbjct: 30 PKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 168 DVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETL 293
D Q +AI +ILGG ++ TG+GK+ + +P + + TL
Sbjct: 272 DGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 174 QAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQ 275
QAEAI L G +V +A T SGK+ + +P+ +
Sbjct: 398 QAEAISAALAGKNVAVATMTSSGKSLCYNVPVFE 431
>At1g26760.1 68414.m03258 SET domain-containing protein contains
Pfam profiles PF00856: SET domain, PF00515:
tetratricopeptide repeat (TPR) domain
Length = 967
Score = 28.7 bits (61), Expect = 3.8
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Frame = +3
Query: 111 GVLPEIGKAIEEMDWTLPTDVQAEAIPLIL--GGGDVLMAAETGSGKTGAFCLPILQIVW 284
G L ++G E DW D A P ++ G GD+ M + KTG FC+ + +
Sbjct: 247 GALFDVGS---EKDW----DFLYIASPHVVFHGDGDLRMYYHSFDEKTGEFCIGMAR--- 296
Query: 285 ETLKDMQEGKTGKVITQTSSECT-MSFFDRTDALAVTPDGLRCQSRNQKDWHGCRATKGV 461
+ ++ K GK++ SE + FFD C +RN++D A +GV
Sbjct: 297 -SRDGIKWLKLGKILGGRKSEKDGLGFFDELGG------RYPCVTRNKRDESYVMAYEGV 349
Query: 462 HTKGAYYFEATVTDEGL 512
G V+ +G+
Sbjct: 350 DRTGKTSIGFAVSKDGI 366
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 456 LWLPYTRASLFDFWIDTVTRQE 391
LWLP + A LFDF+ D R E
Sbjct: 571 LWLPVSPALLFDFFRDEARRHE 592
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 343 LSVLCHFSIALTHWLLLLTGYGVNPEIKKTGTGVGQ 450
L++L H+ I W+ LLT G+ P ++ G Q
Sbjct: 86 LAILVHYMIDSKGWVFLLTLVGITPLAERLGYATEQ 121
>At1g28340.1 68414.m03481 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to
receptor-like protein kinases
Length = 626
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 153 WTLPTD-VQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLKDMQEGKTGKVI 329
W+ D V AEA+ +LGG + TG G + ILQ V + EG VI
Sbjct: 134 WSSQDDQVFAEALIFLLGGTATICFHSTGHGDPAILSIEILQ-VDDKAYSFGEGWGQGVI 192
Query: 330 TQTSSECT 353
+T++ T
Sbjct: 193 LRTATRLT 200
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = -1
Query: 325 TLPVFPSCISFKVSQTICNIGKQNAPVFPLPVSAAISTSPPPKIRGIASAWTSVGRVQSI 146
T+P+ PS FK + + A V PLP+ + S+ PP ++ V +
Sbjct: 156 TIPILPSVELFKP------VPRPGAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEESNR 209
Query: 145 SSIALPISGST 113
S + I+ +T
Sbjct: 210 SHESTNINNTT 220
>At3g27730.1 68416.m03462 ATP-dependent DNA helicase, putative
similar to SP|P51979 ATP-dependent DNA helicase MER3 (EC
3.6.1.-) {Saccharomyces cerevisiae}; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF02889: Sec63
domain
Length = 1113
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 171 VQAEAIPLILGGG-DVLMAAETGSGKTGAFCLPILQI 278
+Q+E PL +++++A TGSGKT F L IL++
Sbjct: 28 LQSECFPLCFHSDINMIISAPTGSGKTVLFELCILRL 64
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 ILGGGDVLMAAETGSGKTGAFCLPILQIVWET-LKDMQEGKTGKVITQTSSECTM 356
I G D + AE SG+ GA LP+ I + T L + K + +SS+ T+
Sbjct: 700 IEGNSDADIYAENDSGRNGALALPLAAIEFVTRLASGIFSRARKSVDSSSSDYTV 754
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,885
Number of Sequences: 28952
Number of extensions: 344071
Number of successful extensions: 1011
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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