Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0240
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   1.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   3.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   7.7  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.7  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 241 YPEEDTPEEIIQRRGVVLSEL 303
           YP E+  EE+ ++ G+ +S++
Sbjct: 257 YPSEEAKEELARKCGITVSQV 277


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 379 MRDPKTLINHLSTNKEYEFKIEMIDSM 459
           + DP T    L+TN+ YE  +   DS+
Sbjct: 144 LSDPNTNKLKLNTNESYELTVLKSDSL 170


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 449 SIACIVWPNIAMNVEIMWSQ 508
           S+   +WP  A   E++WS+
Sbjct: 530 SVDTRLWPRAAALGEVLWSE 549


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 663 RYR*TLEVWLDHRARHPQ 610
           R+R TL +WL+H   + +
Sbjct: 655 RWRQTLAMWLNHNPNYAE 672


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,309
Number of Sequences: 336
Number of extensions: 3577
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)