Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0240
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   119   5e-28
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    35   0.014
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.51 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.90 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    29   0.90 
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    27   2.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.1  
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   3.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   4.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   6.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.3  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.3  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   8.4  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  119 bits (286), Expect = 5e-28
 Identities = 61/156 (39%), Positives = 97/156 (62%), Gaps = 3/156 (1%)
 Frame = +1

Query: 64  KFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML- 240
           K+DL+ KI Q+LDRHL+FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV ++   L 
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLH 73

Query: 241 --YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLS 414
             + +ED      ++R  VL EL EL++ V+ +L +++  D++  +   +D    + HL 
Sbjct: 74  GGHTDEDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHL- 130

Query: 415 TNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLY 522
             + Y    E I  +Y+ A+++Y CGNY  ++  LY
Sbjct: 131 -QEHYNITPERIAVLYKFAQFQYNCGNYGGASDLLY 165



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 566 SVLWGKLASEILVQNW 613
           S  WGK ASEIL  +W
Sbjct: 179 SATWGKFASEILTVDW 194



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 615 DGALDDLTKLREFIDN 662
           DGA+++L KLRE +D+
Sbjct: 195 DGAMEELGKLREMVDS 210


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 24/78 (30%), Positives = 37/78 (47%)
 Frame = -1

Query: 615 PQFWTKISLANLPQRTDKIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNF 436
           P  +   + A L    ++++ V W+HHQ       C   I + F  IFGQ I AID ++ 
Sbjct: 315 PSNYLSPNRAELESTPEQLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSA 367

Query: 435 KLILLVCRKMVYKSFRIP 382
           KL  +  +    +SF  P
Sbjct: 368 KLYKISQQIENARSFDYP 385


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 367 TIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNY 498
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 79   FKIGQYLDRHLVFPLLEF-LAAKETYDQSELLQAKLEILSK 198
            F I +YL  +L+ P LEF L A E   Q  +  A  ++ SK
Sbjct: 1218 FHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSK 1258


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -1

Query: 489 TFIAIFGQTIHAIDHFNFKLILLVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 328
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 178 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDD 357
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++ E VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 358 VMK 366
           V K
Sbjct: 248 VCK 250


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 352  DDVMKTIETMRDPKTLINHLSTNKE---YEFKIEMIDSMYRLAK 474
            +DV+K + T+  PK +I  L   ++   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 250

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = +3

Query: 579 VNWLAKFWSKIGDGALDDLTK--LRE----FIDNGGAGSTASNMQALQQRTLAGSL 728
           VN L   + ++    LD LT+  +RE    +IDNGG  S+A  +    +  LAG L
Sbjct: 150 VNNLRSQFHRLRGTNLDSLTEDAIREAEDDWIDNGGQNSSADELDMSYETLLAGVL 205


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 683 GSGTGSTVIDELSKFG*IIERAIP 612
           GSGTGSTV   L+ F   + R +P
Sbjct: 272 GSGTGSTVFQVLNAFSKAVGRDLP 295


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 576 GVNWLAKFWSKIGDGALDD 632
           GVNW+A  W K  +G L D
Sbjct: 382 GVNWMAYLWHKNENGILAD 400


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +1

Query: 325  EPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIE 444
            +PV+R+       + I + + P+ L  H S  K+Y++ ++
Sbjct: 1947 KPVIRISHFHHTFEVISSKQRPRRLTIHGSDGKDYQYVLK 1986


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 553 CQLATSPVDKSKDMMLTPHNFHIHSDIW 470
           C++    V KS D+ +  H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 217 VTDIRRMLYPEEDTPEEIIQRRGVVLSELQ-ELQDAVEPVL 336
           VTDI+ +L  + DTP   ++  G   +     L+  +EP+L
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLL 573


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 142 KETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEII 273
           ++ YD SE+L  ++E+ S      Y      +  P E T E ++
Sbjct: 163 QKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQEPVV 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,031
Number of Sequences: 5004
Number of extensions: 61356
Number of successful extensions: 190
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)