Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0240
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679... 124 1e-28
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362... 88 6e-18
07_03_0517 + 19000050-19000427,19000539-19000766,19001142-190012... 84 1e-16
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 31 0.94
07_03_1700 - 28810239-28810870,28811304-28812594 30 2.2
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 29 2.9
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192... 29 3.8
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 28 6.6
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360... 28 8.7
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678 28 8.7
>07_01_0836 -
6795224-6795263,6796027-6796128,6796264-6796401,
6796790-6796932,6797388-6797607,6798087-6798208,
6798317-6798544,6798993-6799355
Length = 451
Score = 124 bits (298), Expect = 1e-28
Identities = 56/154 (36%), Positives = 100/154 (64%)
Frame = +1
Query: 61 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 240
++ DLT ++ +D HLVFPLLEFL + Y E+L+AKL +LS TNM+DY DI + L
Sbjct: 2 AEHDLTARMAGQMDCHLVFPLLEFLQERALYANKEILEAKLRLLSGTNMVDYAMDIHKSL 61
Query: 241 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTN 420
+ ++ P+++++RR V+S L+ L +A P++ +Q + ++ +R K H+ +
Sbjct: 62 HDTDEVPDDMVRRRTDVVSRLRALDEATAPIVSFLQNQQL---VQELRPDKQYNLHMLQD 118
Query: 421 KEYEFKIEMIDSMYRLAKYRYECGNYVESASYLY 522
+ ++ E I+++Y+ AK++++CGNY ++A YLY
Sbjct: 119 R-FQIGPEQIETLYQFAKFQFDCGNYSDAAVYLY 151
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 563 LSVLWGKLASEILVQNW 613
LS LWGKLA+EIL+QNW
Sbjct: 164 LSALWGKLAAEILMQNW 180
>07_01_0482 +
3627980-3628270,3628785-3629012,3629116-3629237,
3629747-3629966,3630434-3630576,3631004-3631141,
3631275-3631380
Length = 415
Score = 88.2 bits (209), Expect = 6e-18
Identities = 38/91 (41%), Positives = 61/91 (67%)
Frame = +1
Query: 61 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 240
++ DLT ++ +LD HLV PLLEFL + Y + E+L+AK+ +L TNM+DY DI +
Sbjct: 2 AEHDLTARMAGHLDCHLVLPLLEFLQERHLYPEEEILEAKIRLLRGTNMVDYAMDIHKSR 61
Query: 241 YPEEDTPEEIIQRRGVVLSELQELQDAVEPV 333
Y +D PE++++RR V+S L L +A++ +
Sbjct: 62 YGTDDVPEDMVKRRAEVVSRLTSLGEAIDNI 92
Score = 36.3 bits (80), Expect = 0.025
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +2
Query: 539 CRQLTRIILSVLWGKLASEILVQNW 613
C + R LS LWGKLA+EIL+QNW
Sbjct: 133 CTNIERS-LSALWGKLAAEILMQNW 156
>07_03_0517 +
19000050-19000427,19000539-19000766,19001142-19001221,
19001222-19001441,19001571-19001713,19002023-19002160,
19002295-19002376
Length = 422
Score = 84.2 bits (199), Expect = 1e-16
Identities = 48/175 (27%), Positives = 99/175 (56%), Gaps = 9/175 (5%)
Frame = +1
Query: 61 SKFDLTFKIGQYLDRHLVFPLLEFLAAK--ETYDQSELLQAKLEILSK-TNMIDYVTDIR 231
++ DLT ++ +++ HLVFPLLEFL + Y E+LQAKL +L + TNM+DY D
Sbjct: 2 AEHDLTARMAAHMNCHLVFPLLEFLQWRPGRVYAVEEILQAKLRLLIQGTNMVDYAMDTH 61
Query: 232 RMLYPEED------TPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK 393
++L+ + D P+++++RR V++ L L P++ ++ + P
Sbjct: 62 KLLHGDTDDDVVVPVPDDMVERRHEVVTRLGALAAPAAPIVSALKNHHL--------GPD 113
Query: 394 TLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKN 558
N ++ ++ + I+++Y+ AK++++CGNY ++A L+ + + + ++++
Sbjct: 114 KEHNIRMLHERFQIGPDQIEALYQYAKFQFDCGNYPDAAENLHRYRALCTSSERS 168
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 563 LSVLWGKLASEILVQNW 613
LS WGKL++EIL NW
Sbjct: 169 LSAQWGKLSAEILNNNW 185
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 151 YDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 330
YD + + +T D D L P+EDT E ++RRGV L+E + +AV+
Sbjct: 363 YDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKRRGVPLTERECSTNAVDI 422
Query: 331 V 333
V
Sbjct: 423 V 423
>07_03_1700 - 28810239-28810870,28811304-28812594
Length = 640
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = +1
Query: 148 TYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVE 327
T+D +LL+A E+L K + Y T + +L ED +++R V++ +E + +E
Sbjct: 336 TFDLEDLLRASAEVLGKGS---YGTAYKAIL---EDGTVVVVKRLKDVVAGKKEFEQQME 389
Query: 328 PVLRLMQRDDV--MKTIETMRDPKTLINHLSTNKEYEFKIEMI 450
+ RL + ++ ++ +D K ++ TN + K+ I
Sbjct: 390 LIGRLGKHANLVPLRAYYYSKDEKLIVYDYLTNGSFSTKLHGI 432
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 606 WTKISLANLPQRTDKIILVSWR 541
W+KI+ A +P RTD + L WR
Sbjct: 568 WSKIAGAKIPHRTDNMCLRRWR 589
>10_08_0523 -
18518158-18518442,18518786-18518899,18518994-18519219,
18519364-18519470,18519809-18519964,18520100-18520210
Length = 332
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 181 LEILSKTNMIDY---VTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 336
+EIL ++ +++ V I ++LY ED P + + + ++ + Q Q + P+L
Sbjct: 225 VEILCQSPEVEHLPIVNAIHKVLYAAEDDPSMVAEAQAMISQQQQSEQPMLSPIL 279
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -3
Query: 385 PSWFQL----FSLHHLFA*VSILALLHLEVPAVPKELHLSAV*FLQECLLQD 242
PS F+L FSL L A VS ++L H E +P+++H + L+ C+ +D
Sbjct: 367 PSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSP--LEACVQKD 416
>09_04_0388 +
17234485-17234583,17234710-17234893,17235252-17236057,
17236148-17236432
Length = 457
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 486 MWKLCGVSIISLLLSTGDVAN*QELFCRFFGVNWLAKFWSKIG 614
M LCG +++LL T DVA+ Q F G NW W K G
Sbjct: 5 MAALCGFLLVALLWLTPDVAHAQTQIL-FQGFNW--DSWKKQG 44
>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
Length = 258
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 358 VMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYR 480
V+ +ET P TL+ L+TNK+Y K SMYR +R
Sbjct: 127 VIDNLETSPVPDTLLWGLATNKKYTTK-----SMYRTLTFR 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,967,853
Number of Sequences: 37544
Number of extensions: 375746
Number of successful extensions: 989
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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