Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0240
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3) 69 3e-12
SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3) 46 3e-05
SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13) 36 0.044
SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4) 31 1.3
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5) 29 2.9
SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3) 29 2.9
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 29 3.9
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 3.9
SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 28 8.9
SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27) 28 8.9
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 28 8.9
>SB_8134| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 399
Score = 69.3 bits (162), Expect = 3e-12
Identities = 38/117 (32%), Positives = 62/117 (52%)
Frame = +1
Query: 208 IDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRD 387
+D+ D+ + LYP+E+ P ++++R V+ EL++LQ EP+ I D
Sbjct: 6 VDFAMDVYKGLYPDEEVPTSLVEKRVEVVKELKDLQAQTEPI------------INCFSD 53
Query: 388 PKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKN 558
P+ + K EM+D +Y+ AK++YECGNY +A YLYF + + D N
Sbjct: 54 PEFTA---------QIKPEMLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTN 101
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 563 LSVLWGKLASEILVQNW 613
L+ LWGKLASEIL+QNW
Sbjct: 103 LNALWGKLASEILMQNW 119
>SB_42056| Best HMM Match : TPR_3 (HMM E-Value=1.3)
Length = 215
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 445 MIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKN 558
M+D +Y+ AK++YECGNY +A YLYF + + D N
Sbjct: 1 MLDVLYKFAKFQYECGNYSGAAEYLYFYRALAPGGDTN 38
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 563 LSVLWGKLASEILVQNW 613
L+ LWGKLASEIL+QNW
Sbjct: 40 LNALWGKLASEILMQNW 56
>SB_4521| Best HMM Match : TPR_2 (HMM E-Value=1.7e-13)
Length = 829
Score = 35.5 bits (78), Expect = 0.044
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +1
Query: 322 VEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRLAKYRYECGNYV 501
+E ++L + V +T T + L N L KEY+ +E+ YRL K R G +
Sbjct: 708 MEKAIKLQKELGVGETEHTATFQRNLANVLLALKEYDLALEVAQESYRLRKER--LGTHP 765
Query: 502 ESASYLYFCQLV 537
E+A LY ++
Sbjct: 766 ETARILYMIGVI 777
>SB_30377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 214 YVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKT 369
Y+ D ++YP DT EII + V + ++E + + VL ++R+ + KT
Sbjct: 215 YLVDCPGVVYPTGDTETEIILKGVVRVENVKEAAEHIPTVLERVKREYLAKT 266
>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
Length = 801
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 232 RMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVLR-LMQRDDVMKTIETMRDPKTLINH 408
R LYPE + + + V + ELQ A+ R L+++ + TI + D KTL+ H
Sbjct: 511 RELYPETEPAGLFVAKVDVSEVPMAELQAALPAFERQLLRKGYGLYTISGVLDRKTLVEH 570
Query: 409 LSTNKEYEFKIEMIDSM 459
L ++ + + ++ +M
Sbjct: 571 LCASEGFREQGDLAAAM 587
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Frame = +1
Query: 274 QRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK-TLINHLST-----NKEYEF 435
+R +L +++EL V+ + + +++ ++K ++ + D K TLI +T NKE+E
Sbjct: 1855 EREKELLQQVEELSTQVKTLEQRIEQLVIVK-MDALHDQKATLIEEHNTAIEKLNKEHEA 1913
Query: 436 KIEMIDSMYR 465
K+E ++ +Y+
Sbjct: 1914 KLESVERLYK 1923
>SB_41565| Best HMM Match : Tet_res_leader (HMM E-Value=7.5)
Length = 58
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 409 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 507
+S N YE K++ S RLAK+R+ +Y E+
Sbjct: 15 MSCNSSYEAKLKRSSSRMRLAKHRHILHHYTEN 47
>SB_15572| Best HMM Match : Planc_extracel (HMM E-Value=9.3)
Length = 45
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 409 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 507
+S N YE K++ S RLAK+R+ +Y E+
Sbjct: 2 MSCNSSYEVKLKRSKSRMRLAKHRHILHHYTEN 34
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 139 AKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQD 318
A+ET + + LQ K K + + ++D+ + EE+ + + + +L E+Q+L+D
Sbjct: 934 AQETEEMRQRLQTK-----KNELEELLSDLEGRITEEEENVLALTEDKKKLLKEIQDLED 988
Query: 319 AVE 327
++E
Sbjct: 989 SLE 991
>SB_26058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 409 LSTNKEYEFKIEMIDSMYRLAKYRYECGNYVES 507
LS N YE K++ S RLAK+R+ +Y E+
Sbjct: 37 LSCNLNYEAKLKRSKSRLRLAKHRHILHHYTEN 69
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Frame = +1
Query: 247 EEDTPEEIIQRRGVVLSE--LQELQDAVEPVLRL------MQRDDVMKTIETMRDPKTLI 402
EED E+ I + LQEL++ VE + R RDD+ K ET+ K ++
Sbjct: 1215 EEDEEEDAIYEETIEKQNKRLQELKEEVENLKRKNGIEEKRLRDDINKLSETLEKEKRMV 1274
Query: 403 NHL---STNKEYEFK 438
N L +T ++ +F+
Sbjct: 1275 NQLKNEATEQKNDFR 1289
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Frame = +1
Query: 289 VLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSMYRL 468
++ +++ELQ+ E QR+D + E +R +L+ + E +M + +
Sbjct: 2663 LIQQMRELQNQSEKYRFQKQREDCEREKEHLRQQVSLMRSKGNTQSEELIQQMRELQNQS 2722
Query: 469 AKYRYECGNYVESASY--LYFCQLVMSPTDKNYFVGSLG 579
KYR++ + S + S T+ +Y GS G
Sbjct: 2723 EKYRFQVDDLTRQLSRKDITMSPQSQSRTEVSYVRGSPG 2761
>SB_44863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 333 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 214
Y+L+CIL+ L+ KNY + F F ++H+ +S +
Sbjct: 57 YFLHCILESLKRGKNYVRIFFADFSKGFDLVDHNVLMSEL 96
>SB_38423| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 329
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 333 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 214
Y+L+CIL+ L+ +NY + F F ++H+ +S +
Sbjct: 90 YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 129
>SB_40322| Best HMM Match : RVT_1 (HMM E-Value=7.4e-27)
Length = 710
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 333 YWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNI 214
Y+L+CIL+ L+ +NY + F F ++H+ +S +
Sbjct: 417 YFLHCILELLERGENYVRIFFADFSKGFDLVDHNVLMSEL 456
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/101 (21%), Positives = 48/101 (47%)
Frame = +1
Query: 157 QSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEPVL 336
Q+E+ +A E+ + + I L + PE +RG+ + + V V
Sbjct: 1041 QAEISKAISEVTENDDKEN--VSIMNELKKNVEEPERFHNQRGI--DHETDFRKMVRAVF 1096
Query: 337 RLMQRDDVMKTIETMRDPKTLINHLSTNKEYEFKIEMIDSM 459
+++ D+ + I+++++ ++ + NKE E KIE ++ M
Sbjct: 1097 AIIE--DLKERIKSVKENTSISTEVLFNKEMEKKIEELEGM 1135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,911,840
Number of Sequences: 59808
Number of extensions: 443257
Number of successful extensions: 1121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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