Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0240
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...   108   3e-24
Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   0.84 
AC006672-1|AAK84544.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.6  
U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA...    28   5.9  
Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical pr...    28   7.9  
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score =  108 bits (260), Expect = 3e-24
 Identities = 53/170 (31%), Positives = 101/170 (59%), Gaps = 3/170 (1%)
 Frame = +1

Query: 61  SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 240
           S FDLT ++  +LD HL+ PLLEF+  +  YD+  L +   ++L+KTNMID V +     
Sbjct: 2   STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----T 57

Query: 241 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 411
           Y  +  P  I  ++  ++ E  EL+  V+ V+ +++  +V + ++  R+      ++ HL
Sbjct: 58  YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117

Query: 412 STNKEYEFKIEMIDSMYRLAKYRYECGNYVESASYLYFCQLVMSPTDKNY 561
           + N  + F ++M+D++++ +K+ YECGNY  ++  LY+ + +++  D NY
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNY 165



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +2

Query: 563 LSVLWGKLASEILVQNW 613
           L+ L+GKLASEIL+Q W
Sbjct: 166 LNALYGKLASEILLQEW 182


>Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical
           protein T16H12.2 protein.
          Length = 181

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 178 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 330
           K  I+ +T    +V  +  +LYP++DTP +I++ R   L   Q+ +D  EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 18/77 (23%), Positives = 38/77 (49%)
 Frame = -1

Query: 453  IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 274
            ++H + K I   C + V ++    H F  +++++ +  S+Y +  I+  LQ+    TS  
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782

Query: 273  YNFFRSVFFRIEHSSDV 223
            YN      F  + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799


>AC006672-1|AAK84544.1|  305|Caenorhabditis elegans Hypothetical
           protein K08D12.5 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/67 (32%), Positives = 30/67 (44%)
 Frame = -3

Query: 610 ILDQNFASQFTPKNRQNNSCQLATSPVDKSKDMMLTPHNFHIHSDIWPNDTCYRSFQF*T 431
           +L    AS+F  +N+   S    TS   + K +M  PHNF   +DI P        Q+  
Sbjct: 69  VLVTTIASEFEMRNQVRKSWANYTSNAVRVKFLMGIPHNFANAADI-PRGNFSIVNQYYP 127

Query: 430 HTPCLSK 410
            T CL K
Sbjct: 128 DTKCLVK 134


>U39652-2|AAA80404.1|  817|Caenorhabditis elegans Hypothetical
           protein R07E4.5 protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 97  LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 261
           L R ++  L EF    +TY   E L+AKLE  +   + +    ++    PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462


>Z82073-6|CAB04924.1|  333|Caenorhabditis elegans Hypothetical
           protein W06D12.3 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 148 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 282
           T+ Q        E L+ T  +ID+   I  M+Y  + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315


>AF260242-1|AAF97548.1|  333|Caenorhabditis elegans palmitoyl-CoA
           fatty acid desaturaseFAT-5 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 148 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 282
           T+ Q        E L+ T  +ID+   I  M+Y  + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315


>Z81564-2|CAB04568.1|  189|Caenorhabditis elegans Hypothetical
           protein K05C4.2 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 557 IILSVLWGKLASEILVQNWGWR 622
           +IL  +W K+ SE+L  N+GW+
Sbjct: 45  LILVFMWLKVGSELLRTNFGWK 66


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 336 QYWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNIIYHVSFAQN 187
           ++  YC+L  +     +TSP    F SVF RI     +  I+Y + F ++
Sbjct: 170 KFGYYCLLGVISISYYFTSPQTTAFNSVFARIWQFL-IGMIVYLIYFKKS 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,562,428
Number of Sequences: 27780
Number of extensions: 340840
Number of successful extensions: 1053
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)