Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0240
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.0  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 501 HIISTFIAIFGQTIHAIDHFNFKLILLVCRKMVYKS 394
           HI+S         I AI +    LIL+ CRK V KS
Sbjct: 37  HIVSIVFYSVLMIISAIGNTTV-LILITCRKRVSKS 71


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 729  PVNQPGSVAVGLACCWQWNRLHRYR-*TLEVWLDHRARHPQFWTKIS 592
            P++ P ++   +  CWQ  R HR     L   LD   R P    KI+
Sbjct: 860  PMDCPEAIYQLMLDCWQKERTHRPTFANLTQTLDKLIRSPDTLRKIA 906


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 276 LYNFFRSVFFRIEH 235
           +Y+FF+   FRI+H
Sbjct: 337 IYDFFKDSSFRIQH 350


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 29  IHENKLS-T*VTQNLI*RLK*DSILIGISCFLY*NS*QQRRHMTSQSS 169
           +HE +   T + QN+I  +K D +L     +LY N+       T  S+
Sbjct: 348 VHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSA 395


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 29  IHENKLS-T*VTQNLI*RLK*DSILIGISCFLY*NS*QQRRHMTSQSS 169
           +HE +   T + QN+I  +K D +L     +LY N+       T  S+
Sbjct: 386 VHEKQQEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSA 433


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 400 INHLSTNKEYEFKI 441
           +NHL T+ EY++++
Sbjct: 761 VNHLLTHHEYDYEL 774


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 517  LYFCQLVMSPTDKNYFVGSL 576
            LY C +  SP D+++ + SL
Sbjct: 1065 LYDCYVCYSPNDEDFVLHSL 1084


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,159
Number of Sequences: 438
Number of extensions: 4220
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)