Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4X3V4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.76 
UniRef50_Q2U186 Cluster: Predicted protein; n=1; Aspergillus ory...    34   4.0  

>UniRef50_A4X3V4 Cluster: Putative uncharacterized protein; n=1;
           Salinispora tropica CNB-440|Rep: Putative
           uncharacterized protein - Salinispora tropica CNB-440
          Length = 153

 Score = 36.3 bits (80), Expect = 0.76
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 34  WGALTCDPYRIPWSSTGPLSRGLLGATS 117
           W A TCDP  +PW++T P +RG  G T+
Sbjct: 41  WSAETCDPVDLPWAATNP-TRGQCGVTA 67


>UniRef50_Q2U186 Cluster: Predicted protein; n=1; Aspergillus
           oryzae|Rep: Predicted protein - Aspergillus oryzae
          Length = 144

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 8   LRDTTPRSGGVPSHAIPIGSPGLQLVPCPGVSSV 109
           + DT   S  +P HA P   P   + PCPG  ++
Sbjct: 1   MADTPNTSAALPQHAAPFNIPSHNIAPCPGCENI 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,586,149
Number of Sequences: 1657284
Number of extensions: 12277477
Number of successful extensions: 26113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26109
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)