Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    25   0.81 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   3.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   4.3  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 35  GVPSHAIPIGSPGLQLVP 88
           GVP   IP+ +PGL L P
Sbjct: 183 GVPPAGIPLQNPGLNLNP 200


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 82  GPLSRGLLGATSDQTL--QLGRPNNALKHN 165
           GP   G  GA +  +   Q G+P+NA++H+
Sbjct: 116 GPEKGGGAGAAASGSAAAQAGQPDNAIEHS 145


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -1

Query: 235 RD*QRSLYDY--TVHIRFLFDYRH 170
           +D    LYDY  T H+  L D+ H
Sbjct: 267 KDPNSHLYDYDLTTHVMLLSDWMH 290


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -1

Query: 235 RD*QRSLYDY--TVHIRFLFDYRH 170
           +D    LYDY  T H+  L D+ H
Sbjct: 267 KDPNSHLYDYDLTTHVMLLSDWMH 290


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,445
Number of Sequences: 336
Number of extensions: 3495
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)