Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    28   1.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    28   1.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   6.2  

>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +1

Query: 616 VFSILTNCIIS-PSSTHVFDHLLI 684
           VFS + N ++  PS+ HV+DHL +
Sbjct: 144 VFSSVDNSLVKGPSNVHVYDHLFV 167


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 66   PLVFNWSPVQGSPRCYFRPNSSAWTSKQCFKA 161
            P +F++S   GS RC  R ++S W+    F A
Sbjct: 2188 PCMFSYSHNYGSRRCRLRADNSNWSEPVSFDA 2219


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 371 VLLCHLVNVNIYILQQPYYILKII 300
           + LC L+++ +  LQQP  I +II
Sbjct: 41  IALCRLIHIPLSFLQQPRVIAEII 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,548
Number of Sequences: 5004
Number of extensions: 54065
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)