Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400...    29   4.9  
03_05_0171 + 21486473-21486775,21486835-21486912,21487223-214874...    29   4.9  

>12_01_0505 -
           4005211-4005234,4005235-4005432,4005522-4006006,
           4006533-4006700,4007128-4007203,4007327-4007409,
           4007511-4007589,4007685-4007753,4008174-4008266,
           4008668-4008713,4009398-4009522
          Length = 481

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 564 DEGSVCEEKYK*QKLVARFLNINKLYHITFIHSC 665
           DE SVCE+  K  KL    L +NK + +   H C
Sbjct: 267 DETSVCEDYKKISKLFLDMLELNKGHPLYLSHLC 300


>03_05_0171 +
           21486473-21486775,21486835-21486912,21487223-21487407,
           21487507-21487897
          Length = 318

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +1

Query: 70  WSSTGPLSRGLLGATSDQTLQLGRPNNALKHNFRDGSQTKSECEPY 207
           WS  GP   G + A +   L+ G+P    K     G  T S   PY
Sbjct: 137 WSGAGP---GFMDAATQGALEAGKPVGGFKIGKEAGEWTTSNFHPY 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,233,922
Number of Sequences: 37544
Number of extensions: 322619
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)