Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0238
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)                29   2.8  
SB_26137| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.27)           29   5.0  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 85  PLSRGLLGATSDQTLQL-GRPNNALKHNFRDGSQTKSEC 198
           PLSR  L +   + LQL G P N   H+FR G+ T + C
Sbjct: 345 PLSRQKLTSWLREILQLEGVPGNYSSHSFRIGAATVAAC 383


>SB_26137| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.27)
          Length = 271

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 52  DPYRIPWSSTGPLSRGLLGATSDQTLQLGRPNNALKHNFRDGSQTKSECE 201
           D Y +P  S  P  R +L   +   L L +P N +  N R+G  T+ E +
Sbjct: 30  DSYLVP--SDAPKKRVILYLVNGVKLALQQPGNQVSRNGREGMGTEKEAQ 77


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 23  PRSGGVPSHAIPIGSPGLQLVPCP 94
           P  GGVPSH  P+  P   ++P P
Sbjct: 423 PPGGGVPSHPPPLPQPPPSIIPPP 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,720,631
Number of Sequences: 59808
Number of extensions: 393856
Number of successful extensions: 1000
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)