Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0238
(718 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011806-1|AAH11806.1| 249|Homo sapiens pleckstrin homology dom... 32 2.4
AK023249-1|BAB14486.1| 249|Homo sapiens protein ( Homo sapiens ... 32 2.4
AF434819-1|AAL30774.1| 249|Homo sapiens phafin 2 protein. 32 2.4
BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein. 31 3.1
BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein. 31 3.1
BC089409-1|AAH89409.1| 425|Homo sapiens PB1 protein protein. 31 3.1
BC015323-1|AAH15323.1| 306|Homo sapiens PB1 protein protein. 31 3.1
AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein. 31 3.1
AK001507-1|BAA91728.1| 306|Homo sapiens protein ( Homo sapiens ... 31 3.1
AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein. 31 3.1
AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein. 31 3.1
AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein. 31 3.1
>BC011806-1|AAH11806.1| 249|Homo sapiens pleckstrin homology domain
containing, family F (with FYVE domain) member 2
protein.
Length = 249
Score = 31.9 bits (69), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 340 FIYYNNHIIY*KLY*QKKT*RKFHIVPIEDFAIDT 236
F +N+ ++Y + QKK K HI+P+E+ ID+
Sbjct: 55 FFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDS 89
>AK023249-1|BAB14486.1| 249|Homo sapiens protein ( Homo sapiens
cDNA FLJ13187 fis, clone NT2RP3004242, weakly similar to
PUTATIVE RHO/RAC GUANINE NUCLEOTIDE EXCHANGE FACTOR. ).
Length = 249
Score = 31.9 bits (69), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 340 FIYYNNHIIY*KLY*QKKT*RKFHIVPIEDFAIDT 236
F +N+ ++Y + QKK K HI+P+E+ ID+
Sbjct: 55 FFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDS 89
>AF434819-1|AAL30774.1| 249|Homo sapiens phafin 2 protein.
Length = 249
Score = 31.9 bits (69), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 340 FIYYNNHIIY*KLY*QKKT*RKFHIVPIEDFAIDT 236
F +N+ ++Y + QKK K HI+P+E+ ID+
Sbjct: 55 FFLFNDILVYGNIVIQKKKYNKQHIIPLENVTIDS 89
>BC115011-1|AAI15012.1| 1540|Homo sapiens PB1 protein protein.
Length = 1540
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1367 GGPPPHHLPPGVPGLPGIPPPGV 1389
>BC115010-1|AAI15011.1| 1615|Homo sapiens PB1 protein protein.
Length = 1615
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1442 GGPPPHHLPPGVPGLPGIPPPGV 1464
>BC089409-1|AAH89409.1| 425|Homo sapiens PB1 protein protein.
Length = 425
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 252 GGPPPHHLPPGVPGLPGIPPPGV 274
>BC015323-1|AAH15323.1| 306|Homo sapiens PB1 protein protein.
Length = 306
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 133 GGPPPHHLPPGVPGLPGIPPPGV 155
>AY281068-1|AAP34197.1| 1689|Homo sapiens polybromo-1D protein.
Length = 1689
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1516 GGPPPHHLPPGVPGLPGIPPPGV 1538
>AK001507-1|BAA91728.1| 306|Homo sapiens protein ( Homo sapiens
cDNA FLJ10645 fis, clone NT2RP2005767, moderately
similar to G.gallus PB1 gene. ).
Length = 306
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 133 GGPPPHHLPPGVPGLPGIPPPGV 155
>AF225870-1|AAG48939.1| 1602|Homo sapiens polybromo-1 protein.
Length = 1602
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1429 GGPPPHHLPPGVPGLPGIPPPGV 1451
>AF197569-1|AAG34760.1| 1582|Homo sapiens BAF180 protein.
Length = 1582
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1409 GGPPPHHLPPGVPGLPGIPPPGV 1431
>AF177387-1|AAG48933.1| 1634|Homo sapiens polybromo-1 protein.
Length = 1634
Score = 31.5 bits (68), Expect = 3.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 32 GGVPSHAIPIGSPGLQLVPCPGV 100
GG P H +P G PGL +P PGV
Sbjct: 1461 GGPPPHHLPPGVPGLPGIPPPGV 1483
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,696,134
Number of Sequences: 237096
Number of extensions: 1923703
Number of successful extensions: 4496
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4496
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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